Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1311 ATGTTGCTCAGACATTCTGCAATGGGTAGCATTTGGATAGCCCATTTCTTTCTGTTTTTGGCCATACTCAATGCAACTCTTGGTGATAATGCAACGGATTCCTACTGGCTTCTGAGAATTAAGTCACAGCTTGTTGATCCATTAGGAGCTCTAAATAACTGGTCTCCAATAACTCCTGTCTGTAGCTGGAATGGACTAACATGTGCAGCTGATCAGACCCATATTATAGGCCTGAATTTATCTGGTTCAGGAATTTCAGGTTTCATTTCGGCCGAGTTCAGTCACCTAAATTCTCTTCAAACACTTGATTTGTCTTCAAATTCCCTCACTGGCTCCATTCCTTCTGAGATTGGGCTGCTTCAGAATCTAAGAATACTTCAACTCTACTCAAATTATCTCTCAGGAACCATTCCAGCAGAGATAGGTAATTTGAAGAGGTTGCAAGTTCTTAGAATAGGAGATAACATGTTGACAGGTGAAATTACACCGAGTATCGGTGACTTGAGCGAGTTGACATTGTTGGGTCTAGCTTACTGCTATTTTAATGGAAGCATACCCAGTGAGATTGGTAACTTGAAGCATCTAGTGTCTCTTGATTTAGAAAAGAACAGTCTTGGGGGCCTCGTACCCAAAGAGATTCAAGGTTGCGAAGAGCTTCAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTCTTCTATGGGGTCTCTTAGATCACTGCAAGTTCTGAACCTGGCCAACAATAGTCTATCTGGGTCAATTCCTGCTGCTTTGAATCATCTATCCAAGTTGAAGTACCTGAATTTGCTTGGAAACCAACTAAGCGGGGAAATTCCTTCAGAGCTTAATAGTTTGAGTCAGCTGCAGGAGCTCGACTTATCCAAAAACAACCTCTCTGGTTCAATAACCCTCCTTAATAGCCAACTAAGGAGTCTTGAAACTCTGGTTCTGTCTGATAATGCTTTGACAGGTAACATTCCAGCCAACTTCTGTTTCCAAGGTTCAAAACTTGAGCAACTTTTCTTGGCTCGGAATGAGCTCTCTGGCAGATTTCCCATGGGGTTACTCAACTGCTCCTCAATCCAACAGTTGGATCTTTCTGGTAACAGCTTTGAAGGGGAACTTCCATCCAGCTTGCACAAACTACAGAGCCTCATAGATCTCTCACTCAACAACAACAGCTTCATGGGATCTCTACCTCCGGAAATTGGAAACATTAGTACCTTGGAAAGCCTCTTCTTATTTGGCAACATTTTTACAGGCGAAATTCCAGTGGAGATCGGAAGGCTTCGGAGGTTGAAATACATTTACCTCTACGATAACCAGATGTCTGGGCCAATACCAAGAGAGATAACAAACTGCACAAGCTTAAGGGAAATTGACTTCTTTGGAAACTATTTTACAGGGCCCATTCCAGAGACTATAGGTAAGCTCAAGGACTTGGTTCTGCTTCAACTAAGGCAGAATGACTTGTGGGGTCCAATCCCTCCGAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCATTAGCAGATAATAAGCTTTCTGGTTCCATACCACCCACTTTCAGTTACCTTACAGAACTTAGAACCATTACCCTTTACAACAACTCCTTCCAAGGACCTCTCCCAGATTCACTTTCTCTTCTCAAAAACCTCAAGATCATAAATTTTTCTCACAACAAGTTCAGTGGAAGTATCGTTCCTCTCACTGGTTCAAATTTTCTTACTGCTTTGGACTTGACCAACAACAGCTTCTCAGGTCCCGTCCCTTCTAGCCTAGCCATGTCCAAAAATCTCAGCCGTCTCAGACTCGCACAGAATCATCTTGCAGGAAGCATTCCTTCTGAACTTGGTCAGCTCAAAGAGCTCAACTTTCTTGATTTGTCTTTTAACAATTTAACAGGAGATGTGGCACCCCAACTCTCAAACTGTCGAAAAATTGAGCACCTTCTGCTGAATAATAACAGATTGACTGGAAATATGCCTCCATGGTTGGGAAGATTGCAACAACTTGGTGAGCTAGATCTCTCATTCAATAGCTTCCATGGAATGGTACCTGCAGAGCTTGGAAAGTGTTCCAAATTACTCAAGCTTTCTCTCCATCACAACAATCTCTCGGGTAAAATCCCCCAAGAGATTGGAAATCTTACTTCTCTCAATGTCTTTAACTTGCAAAGGAATAGTTTTTCCGGCCTCATTCCTTCAACAATTCAGCAATGCAAGAAGCTCTATGAGCTCAGGCTCTCAGAAAACCTCTTGACAGGTGCTATACCAGATGATCTAGGAGGGCTCACAGAATTGCAAGTGATATTGGACTTGAGCAAAAACCTCTTATCTGGGGAGATTCCATCATCTCTAGGAAATCTCATGAAGCTAGAAAGACTCAATCTTTCTTTCAATCAACTTCATGGACAAGTTCCTCCTTCACTTGGTAAACTTACCAGCCTGCACGTGCTAAATATCTCAAATAATCATCTTGAAGGCCAGATTCCTTCAACCTTTTCAGGATTTCCACTAAGCTCCTTTCTGAACAACGAGCGTTTGTGCGGCCCACCATTAGTATCGTGCTCAGAATCTAGAGGGCAAGAGCAAGTGCAGCTGTCGAACAATGCAGTGGCAGCAATCATAGTGGCCATTGTGTTTACTTCTACAGTGATATGCTTAGTATTGTTGTATATAATGGTGAGAATGTGGTGTAACTGGAGAAAAGTTGCTATTTCTAGTACACATGGTGAACAAAAGAGAGAGGAGGCTGGATGGGTCTGTGCTGATAAGAAGACAAGGAATGGAGAGTACTGGAATATGAATTCTTTCGGGTTCATTCCTTCACCAGATAAGCAGAATTCAGTAACAACTACTTGCATTTTCAATCTTAAAATTGATGCAGAAGCCATGGAAAATTCCCTGGTCTGA 2925 0.4226 MLLRHSAMGSIWIAHFFLFLAILNATLGDNATDSYWLLRIKSQLVDPLGALNNWSPITPVCSWNGLTCAADQTHIIGLNLSGSGISGFISAEFSHLNSLQTLDLSSNSLTGSIPSEIGLLQNLRILQLYSNYLSGTIPAEIGNLKRLQVLRIGDNMLTGEITPSIGDLSELTLLGLAYCYFNGSIPSEIGNLKHLVSLDLEKNSLGGLVPKEIQGCEELQNFAASNNMLEGDIPSSMGSLRSLQVLNLANNSLSGSIPAALNHLSKLKYLNLLGNQLSGEIPSELNSLSQLQELDLSKNNLSGSITLLNSQLRSLETLVLSDNALTGNIPANFCFQGSKLEQLFLARNELSGRFPMGLLNCSSIQQLDLSGNSFEGELPSSLHKLQSLIDLSLNNNSFMGSLPPEIGNISTLESLFLFGNIFTGEIPVEIGRLRRLKYIYLYDNQMSGPIPREITNCTSLREIDFFGNYFTGPIPETIGKLKDLVLLQLRQNDLWGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLTELRTITLYNNSFQGPLPDSLSLLKNLKIINFSHNKFSGSIVPLTGSNFLTALDLTNNSFSGPVPSSLAMSKNLSRLRLAQNHLAGSIPSELGQLKELNFLDLSFNNLTGDVAPQLSNCRKIEHLLLNNNRLTGNMPPWLGRLQQLGELDLSFNSFHGMVPAELGKCSKLLKLSLHHNNLSGKIPQEIGNLTSLNVFNLQRNSFSGLIPSTIQQCKKLYELRLSENLLTGAIPDDLGGLTELQVILDLSKNLLSGEIPSSLGNLMKLERLNLSFNQLHGQVPPSLGKLTSLHVLNISNNHLEGQIPSTFSGFPLSSFLNNERLCGPPLVSCSESRGQEQVQLSNNAVAAIIVAIVFTSTVICLVLLYIMVRMWCNWRKVAISSTHGEQKREEAGWVCADKKTRNGEYWNMNSFGFIPSPDKQNSVTTTCIFNLKIDAEAMENSLV 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1311 974 SMART LRR_typ_2 672 696 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 192 215 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 96 119 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 385 409 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 288 310 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 120 144 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 240 263 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 720 743 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 768 793 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 312 337 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 817 840 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 529 553 IPR003591 -
Glsi13g1311 974 SMART LRR_typ_2 624 648 IPR003591 -
Glsi13g1311 974 Pfam Leucine rich repeat 313 373 IPR001611 GO:0005515
Glsi13g1311 974 Pfam Leucine rich repeat 226 277 IPR001611 GO:0005515
Glsi13g1311 974 Pfam Leucine Rich Repeat 819 841 IPR001611 GO:0005515
Glsi13g1311 974 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515
Glsi13g1311 974 Pfam Leucine Rich Repeat 98 117 IPR001611 GO:0005515
Glsi13g1311 974 Pfam Leucine Rich Repeat 795 817 IPR001611 GO:0005515
Glsi13g1311 974 SUPERFAMILY RNI-like 78 399 - -
Glsi13g1311 974 SUPERFAMILY L domain-like 578 858 - -
Glsi13g1311 974 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Glsi13g1311 974 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Glsi13g1311 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 572 864 - -
Glsi13g1311 974 FunFam Uncharacterized protein 186 281 - -
Glsi13g1311 974 Gene3D Ribonuclease Inhibitor 304 525 IPR032675 -
Glsi13g1311 974 Gene3D Ribonuclease Inhibitor 526 864 IPR032675 -
Glsi13g1311 974 PRINTS Leucine-rich repeat signature 288 301 - -
Glsi13g1311 974 PRINTS Leucine-rich repeat signature 99 112 - -
Glsi13g1311 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 30 185 - -
Glsi13g1311 974 FunFam Uncharacterized protein 379 474 - -
Glsi13g1311 974 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
Glsi13g1311 974 ProSiteProfiles Leucine-rich repeat profile. 290 312 IPR001611 GO:0005515
Glsi13g1311 974 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 51 331 - -
Glsi13g1311 974 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Glsi13g1311 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 475 571 - -
Glsi13g1311 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 282 378 - -
Glsi13g1311 974 SUPERFAMILY L domain-like 378 572 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1311 165 851 Receptor kinase-like Gene Family AT5G46330 33.913 5.96e-102 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1311 13 30500903 30503827 Glsi13g1311 13 30500903 30503827 ECH