Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1310 ATGTCTGAAGTTGGCCTTACGTGCGGATCTTCTCAGAACCGAGATGGGGACAAGTTCATCCAAAATTTCATAGCTCTAATGGAAATTGTCTCCCGTAAGGTCAATGAACGAGGGTGGGGAGCCGAGACGATCTATGGAGGTTCGCCTGCAATTTTTGCCTTAGGCCAATGCCACCGTGATCTCGATCCCAAACAGTGCTCTACCTGCTTCACCAAAGCTAGGCGATTGCTACCCAAATGCCTACCCGCCACCTCGGGTCGGATTTATCTGAACGGGTGCTTCCTTCGCTATGACAATTACTCGTTCTTCAACGAAAACGTGGATCCTAATCGTGATAAATATGAATGTGAAAAGCCATCCCAAACTCTGATGGACGATCAAAGCTTGAAACCAGGGTTCTCGAAACATGTTGCTTCGGTGATTTGGAACGTGACGAGGACTGCCGCAAAACACAAGTTCGCTGTTAAAGGGGAGAGAGGAGGAGTGGAGAGTATTTTTGCGTTGGCGCAGTGCTGGGAGACACTGAATGATAGGAAATGCAAAAAATGCTTGGAAGAAGCAGGGAAGAAGGTCCAAAATTGTGTGCCTGGTGCAGAGGGAAAGAGTCTCTTTACTGGTTGCTTTTTGAGGTATTCAACCTGCAAATTCTATAACGACGATGCAGAAACAGTAAAGGATCCTGCTGAGACGTCTAGAATTGGGATGATGATAGCAGGTGTTTTATCAGCAATAGGATTAATATTCCTTATTACCCTTGGTGCACTTCTAAGCTGGCAGGCAAGAGAACCGAGTAAAATAAAAAACAACTATTTTGGTGGCATGCCAAGTTGTGCCTCCAATGAGGGTTTAAACTTCAGGTACGAATTCCTTGAGAAGGCCACGGACTATTTTGATCCCTCGAGGAAACTAGGCCAAGGTGGAGCGGGTTCTGTATTCAAAGGAACCCTCCCGTCTGGTAAGGGCGAAGGGAATGCTCTAACCTGGCAGCAACGGTTTCAAATCATTTGTGGAATAGCTGAGGGCCTTGCATATCTTCATGGAGATTTTGGACTTGCTCGCTGTACTGCTCCAGATAAATCTCATATTAGCACTGGAATTGCTGGGACACTTGTGCTAAGTCCAGATGACCGTACCAAAACTTCCACCATGAGTATTTGGTCTTCAAATGGAAATGCAGTTGAGAACTCCTCTTTCAAAAGCACCGTGTCCTCAACCTCAAGTGAGCATTCAACGCCAGAGAATTTTTTTTCTTCTACCGCCATTGGAACACCACCTGAGCCAAGAAATAGAGTGGAGGAAACACTGGGTTTTCTCGGACTTTTCTTTAGGGGTGCTTTGTTGTTCAAACAGCCTGCTAATATATTGGCCCAGCGTCGTCAACCTACGGTTTTAGTGGTGCAAGAGTCTTCTGTGACCGCGTTGGCATGCAATAGCAGTCATGACAGAGTCCCCTCCTCCTCTCAGGTGGAAGTTCTCTCAGATGAAAAAGATATCATAACAGCAATTGGGTTCGAGAAGCGGGGTGATTATCTTGCTGTTGGAGATCAAAGTGGACGTATGGCTGACTTAAATCAGCAACATTCTCGACAAGTTTTGGAGCAGCAGGATTTTGCTCCTTCCCCACAGCCCCGATTTCATTATAACACAGAATTCCAGGCTTATGAGCATGAGTTTGATTGCCTGTTGAGTGTGGAAGTTGATGAGAAGATTAACAAAAAGATTAAGGAACATAAAATGGAAAAAGTTGAAGAATCGGTATCTCTTCCATCTGAAAGCTCAGAAAATGCGGTTTTAGATGAAAGTAATGAGCAAGAATCCCAGTCCTCTGGGGATGGCCGTCATTTGGAACTTATGTCACCATCTCAGGACATTAATGCCGAGATTGCAGATATAGACGAGATTATAGTTCAAGCAAAATGCCAAAAGGAGTATGATCGTGCTCATTCTTATCATATTAACTCCATCTCAAATAATAGTGATTGTGAGACATTTATCTCGGCAGATGACCTTAGAATCAATTTATGGAATTTTGAGGTCACTGATCAGTGTTTCAATATCATTGACATAAAGCCAGCAAACATGTCGACTCTTATTGAGGTGATAACAGCAGCTGAATTCCATCCCATACAATGTAACCTGCTAGCATATAGCAGCTCACGAGGTTTAATTCGCCTGTGTGACTTGAGACAAGCAGCACTATGTGATCACGGTGCTAGAATATTTCAACATCAAGTAGCCGATGGACACAGTGCATTTTTTGCGGAGATGATATCATGCATCTCAGACATAAAGTTTTTGGAGGATGGGCAGCGTCTCATAAGCCGTGATTACATGTATTTAAAGCTTTGGGACATTCGCATGGATTCTTGTCCAGTCTCAGTATTCAAAGTTCATGAGCACCTGCGCCCTAGGCTGACAGAGACGTTATTCGACAACGAACCCATATTCGATAAATTTGATTGCTGCTTTAGTGGAGATGGACTTCATATTGCAACCGGTTCTTATAGTAATCTCTTGCGGACATTCTGCGTTGCCACTGGAAGAGAGGAAGGGACCAAACCAGAAAATATCGAAACATCCGACAGGAATGAAGATGCTCCAAAGTTTGGAAGGGCGTACAACCTAACATCCCAGCATGACAGTTCAGGGGCTAATAGTGGTAGTATTGACTTTAGCTCCAAGCTGTCGCATGTAGCATGGCATCCAACATCCAATCTAGTTGCTTGTGCTACTCGAAGTACTTTGATTTTGTACTATGACTAG 2763 0.4423 MSEVGLTCGSSQNRDGDKFIQNFIALMEIVSRKVNERGWGAETIYGGSPAIFALGQCHRDLDPKQCSTCFTKARRLLPKCLPATSGRIYLNGCFLRYDNYSFFNENVDPNRDKYECEKPSQTLMDDQSLKPGFSKHVASVIWNVTRTAAKHKFAVKGERGGVESIFALAQCWETLNDRKCKKCLEEAGKKVQNCVPGAEGKSLFTGCFLRYSTCKFYNDDAETVKDPAETSRIGMMIAGVLSAIGLIFLITLGALLSWQAREPSKIKNNYFGGMPSCASNEGLNFRYEFLEKATDYFDPSRKLGQGGAGSVFKGTLPSGKGEGNALTWQQRFQIICGIAEGLAYLHGDFGLARCTAPDKSHISTGIAGTLVLSPDDRTKTSTMSIWSSNGNAVENSSFKSTVSSTSSEHSTPENFFSSTAIGTPPEPRNRVEETLGFLGLFFRGALLFKQPANILAQRRQPTVLVVQESSVTALACNSSHDRVPSSSQVEVLSDEKDIITAIGFEKRGDYLAVGDQSGRMADLNQQHSRQVLEQQDFAPSPQPRFHYNTEFQAYEHEFDCLLSVEVDEKINKKIKEHKMEKVEESVSLPSESSENAVLDESNEQESQSSGDGRHLELMSPSQDINAEIADIDEIIVQAKCQKEYDRAHSYHINSISNNSDCETFISADDLRINLWNFEVTDQCFNIIDIKPANMSTLIEVITAAEFHPIQCNLLAYSSSRGLIRLCDLRQAALCDHGARIFQHQVADGHSAFFAEMISCISDIKFLEDGQRLISRDYMYLKLWDIRMDSCPVSVFKVHEHLRPRLTETLFDNEPIFDKFDCCFSGDGLHIATGSYSNLLRTFCVATGREEGTKPENIETSDRNEDAPKFGRAYNLTSQHDSSGANSGSIDFSSKLSHVAWHPTSNLVACATRSTLILYYD 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1310 920 Pfam Salt stress response/antifungal 131 213 IPR002902 -
Glsi13g1310 920 Pfam Salt stress response/antifungal 8 100 IPR002902 -
Glsi13g1310 920 ProSiteProfiles Gnk2-homologous domain profile. 111 216 IPR002902 -
Glsi13g1310 920 MobiDBLite consensus disorder prediction 400 424 - -
Glsi13g1310 920 MobiDBLite consensus disorder prediction 400 427 - -
Glsi13g1310 920 SUPERFAMILY WD40 repeat-like 463 919 IPR036322 GO:0005515
Glsi13g1310 920 Gene3D Phosphorylase Kinase; domain 1 274 325 - -
Glsi13g1310 920 FunFam Cysteine-rich receptor-like protein kinase 3 118 216 - -
Glsi13g1310 920 MobiDBLite consensus disorder prediction 588 605 - -
Glsi13g1310 920 ProSiteProfiles Gnk2-homologous domain profile. 1 102 IPR002902 -
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 648 675 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 761 788 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 503 523 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 544 572 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 889 918 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 733 760 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 816 842 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 704 732 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 676 703 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 488 920 IPR000009 GO:0000159|GO:0019888
Glsi13g1310 920 Gene3D - 119 216 IPR038408 -
Glsi13g1310 920 Gene3D - 4 102 IPR038408 -
Glsi13g1310 920 Gene3D - 545 919 IPR015943 GO:0005515
Glsi13g1310 920 MobiDBLite consensus disorder prediction 578 617 - -
Glsi13g1310 920 SMART WD40_4 788 843 IPR001680 GO:0005515
Glsi13g1310 920 SMART WD40_4 882 920 IPR001680 GO:0005515
Glsi13g1310 920 SMART WD40_4 691 727 IPR001680 GO:0005515
Glsi13g1310 920 SMART WD40_4 739 784 IPR001680 GO:0005515
Glsi13g1310 920 SMART WD40_4 485 522 IPR001680 GO:0005515
Glsi13g1310 920 SMART WD40_4 637 676 IPR001680 GO:0005515
Glsi13g1310 920 SUPERFAMILY Protein kinase-like (PK-like) 282 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1310 Glsi-ChrGlsi13 30487752 30496059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1310 322 370 Receptor kinase-like Gene Family AT5G40380 44.737 1.06e-10 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1310 13 30487752 30496059 Glsi13g1310 13 30487752 30496059 ECH