Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1178 ATGGCCGCAATCGCAATCGGCGAGTCTACCCATCAAACAAGGCTTCTGTTTATAAGCAGTTTAATAATTTCCAACGACATGTTGGAGTGTCCATCCTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTGAAGAAGAGAGCAAGTGGATTTATAATACTTTTCATGTGATGGAGCTCTCAAGCAATAAGCGCCCACTGCATAATGAAGAACAAGTTGTGTTAAGAAAGTCATGCAAACTTTCAGATGCTCCTGAGGAAGGGGAAACGCAGATGAAAACCCGTGATCTTTCCCTTTCCTTTAACCAAATAAATGACCAAAATCATGCGGGTGGTCAGTCAGATTCAAGCTCACTTATGTACCAACTTGGGCGGGACATCTCAATTAACTGTCTCCTTCGATGCTCTAGGTCTGATTATGGCTCAATCGCCTCAGTGAATAAAAATTTTCGATCTCTCATTCGGAGTGGAGAACTATATAGGCTTAGACGACAGTCGGGTATTGTAGAACATTGGGTTTACTTCTCTTGTAATCTCCTTGAATGGGAGGCATTTGATCCAAACCGCGATCGATGGATGCGCTTGCCTAGAATGACTTCTAATGAATGCTTTATGTGTTCAGATAAGGAGTCGTTGGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAAGGAAATAATGTCTCCTATTATTTACAAATATAGCCTTTTGACCAACACATGGTCATCTGGTAATGAAATGAATATTCCCAGATGCTTGTTCGGTTCTGCCAGCCTTGGAGAAATTGCTATATTGGCTGGTGGTTGTGATCCACGTGGGAACATTTTAAGTTCAGCTGAGCTTTATAACTCAGAAACTGGAACTTGGGAGACTCTTCCAAGCATGAATAAAGCAAGAAAAATGTGTTCCGGTGTATTTATGGATGGGAAATTTTATGTCATAGGTGGGATTGGAGTTGGCAACTCTAGACAGCTAACATCTGGTGAGGAGTTTGATATGCAGACAAGAAAATGGCGTGAAATACCCAACATGTTCCCCGGGCGAAATGGAGGGGCTGGGGTAACTGAGGCACCAACTGCTGCTGAGGCACCTCCTTTGGTTGCTGTTGTAAACAATGTATTGTATGCTGCAGATTATGCACAGCAGGAGGTAAGGAGGTATGATAAAGTTAGGAACTCATGGATCACTGTTGGGAGACTTCCTGAGCGGGCAGCCTCAATGAATGGTTGGGGTTTAGCCTTTCGGGCATGTGGAGATCGGCTAATTGTTATTGGTGGACCCAGGGCTCTGGATGGAAGGGCCATTGAGATTAATGCTTGGGTTCCTGGTGAAGGTGAACCACACTGGAACCTGCTTGCGAGCAGGCAATCGGGGAGCTTTGTTTATAATTGTGCAGTGATGGGATGCTGA 1404 0.4423 MAAIAIGESTHQTRLLFISSLIISNDMLECPSFLVSRDLPSSCEEESKWIYNTFHVMELSSNKRPLHNEEQVVLRKSCKLSDAPEEGETQMKTRDLSLSFNQINDQNHAGGQSDSSSLMYQLGRDISINCLLRCSRSDYGSIASVNKNFRSLIRSGELYRLRRQSGIVEHWVYFSCNLLEWEAFDPNRDRWMRLPRMTSNECFMCSDKESLAVGTELLVFGKEIMSPIIYKYSLLTNTWSSGNEMNIPRCLFGSASLGEIAILAGGCDPRGNILSSAELYNSETGTWETLPSMNKARKMCSGVFMDGKFYVIGGIGVGNSRQLTSGEEFDMQTRKWREIPNMFPGRNGGAGVTEAPTAAEAPPLVAVVNNVLYAADYAQQEVRRYDKVRNSWITVGRLPERAASMNGWGLAFRACGDRLIVIGGPRALDGRAIEINAWVPGEGEPHWNLLASRQSGSFVYNCAVMGC 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1178 467 FunFam F-box/kelch-repeat protein SKIP11 164 452 - -
Glsi13g1178 467 Pfam Kelch motif 296 342 IPR006652 GO:0005515
Glsi13g1178 467 Pfam Kelch motif 248 294 IPR006652 GO:0005515
Glsi13g1178 467 SUPERFAMILY Kelch motif 177 464 IPR015915 GO:0005515
Glsi13g1178 467 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 106 467 - -
Glsi13g1178 467 SMART kelc_smart 216 259 IPR006652 GO:0005515
Glsi13g1178 467 SMART kelc_smart 260 307 IPR006652 GO:0005515
Glsi13g1178 467 SMART kelc_smart 308 356 IPR006652 GO:0005515
Glsi13g1178 467 CDD F-box_AtAFR-like 118 162 - -
Glsi13g1178 467 Gene3D - 161 446 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1178 Glsi-ChrGlsi13 29350914 29353354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1178 111 398 Miscellaneous Gene Families AT4G33900 25.000 4.83e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1178 13 29350914 29353354 Glsi13g1178 13 29350914 29353354 ECH