Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1027 ATGGCTACAGCAGCATCGTCTTCGATTCTACCAGAGCAGCAACAAGTTGCAGGTGGTGCAGGGGAGACCCTGCCTATGAGTAACCCAGAAGCTGCACCAACCCCTGGTGCTTGGAAATCCTCTGGGTCTATTGGCCCATTCTTTGCTGTGATATCTGTGCTTACTGTTCTTGCCGTTCTTTCGTGCTATTTAGGTCGGATGTGTAGGAACCGAAGGCCCCCAACCCCGTTGGAAAGTATCGAGAATAGGGGTTGCTTTGGATGGGTGAAGCGGAAGTGTCTCCAGTTGATTCCTAGAGATGTTGAAGTTGGGAACGTTAAGGCGAAGCCAATGATGGTTTGTGGCGAAGAGAAAAACGATTGTAGAGTTAAAGATGAACTTCGAGTTGATCAACTGAACCAATTAAGGGACGTTTTTGCTCGATTTGACATGGACTCCGATGGCAGCCTAACCCTCCTGGAGCTCGCCCCGCTCCTCCGGTCATTGGGGCTCAAGCCTTCCGGTGATCAAATCCATGCCCTGTTAGCCAACATGGACTCCAACGGAAATGGCTCTGTGGAGTTTGACGAATTGTGCTTTGATCGTGATGGGAATGGCTACATTTCAGCCGCTGAGTTAGCTAGGGCAATGGCCAAAATGGGTCAGCCTCTGACATATCGAGAGCTCACAGAGATGATCAAAGATGCCGATACGGATGGCGACGGTGTGATTAGCTTCAATGAGTTTGCCTCTGTAATGGCTAGGTCAGGCTCTGATTTCTTAGGCCTTGCATTACGGTAA 780 0.4987 MATAASSSILPEQQQVAGGAGETLPMSNPEAAPTPGAWKSSGSIGPFFAVISVLTVLAVLSCYLGRMCRNRRPPTPLESIENRGCFGWVKRKCLQLIPRDVEVGNVKAKPMMVCGEEKNDCRVKDELRVDQLNQLRDVFARFDMDSDGSLTLLELAPLLRSLGLKPSGDQIHALLANMDSNGNGSVEFDELCFDRDGNGYISAAELARAMAKMGQPLTYRELTEMIKDADTDGDGVISFNEFASVMARSGSDFLGLALR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1027 259 MobiDBLite consensus disorder prediction 1 37 - -
Glsi13g1027 259 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Glsi13g1027 259 ProSitePatterns EF-hand calcium-binding domain. 143 155 IPR018247 -
Glsi13g1027 259 ProSiteProfiles EF-hand calcium-binding domain profile. 130 165 IPR002048 GO:0005509
Glsi13g1027 259 FunFam Probable calcium-binding protein CML15 119 191 - -
Glsi13g1027 259 CDD EFh 193 247 IPR002048 GO:0005509
Glsi13g1027 259 Pfam EF-hand domain pair 133 192 IPR002048 GO:0005509
Glsi13g1027 259 Pfam EF-hand domain pair 193 246 IPR002048 GO:0005509
Glsi13g1027 259 Gene3D - 115 191 - -
Glsi13g1027 259 SMART efh_1 221 249 IPR002048 GO:0005509
Glsi13g1027 259 SMART efh_1 187 213 IPR002048 GO:0005509
Glsi13g1027 259 SMART efh_1 134 162 IPR002048 GO:0005509
Glsi13g1027 259 PANTHER CALCIUM BINDING PROTEIN 192 246 - -
Glsi13g1027 259 ProSiteProfiles EF-hand calcium-binding domain profile. 193 216 IPR002048 GO:0005509
Glsi13g1027 259 SUPERFAMILY EF-hand 124 248 IPR011992 -
Glsi13g1027 259 Gene3D - 192 256 - -
Glsi13g1027 259 FunFam Calmodulin A 192 249 - -
Glsi13g1027 259 ProSitePatterns EF-hand calcium-binding domain. 230 242 IPR018247 -
Glsi13g1027 259 ProSiteProfiles EF-hand calcium-binding domain profile. 217 252 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1027 Glsi-ChrGlsi13 28385847 28388384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1027 130 259 EF-hand Containing Proteins AT1G18530 66.883 9.35e-68 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1027 13 28385847 28388384 Glsi13g1027 13 28385847 28388384 ECH