Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0847 ATGGGTCCTTCCACGATCAACGTGCCGCATGTGGAGGAGTCCTTCATAAAATCAGATTCAAAGGAGGCTGTGGACTTGTGCATGAAGGGCTGCAACAGATTGCATCCAGTCGCAAAGGTAGTTGGGTTGATCAGAAGGAATCTTGAAAGGGACTGGAAGATTGGCATAGAATATACATGCAGAGAGAACAACAGGGTGGCAGACTGGCTAGCGAGAAGAGCGCAAGAGGGTGGGGAAGAATCCACATTCCTGTTGAACCCACCGGAAGAGGTGGTAAGCATACTAAAGGAAGATAGGGAGGGACATATCTTCTTCTGTGTAAGATCTGCTACGAGACCCCCCATGAATCTTCCAAAAATGGATTTATGTGATCATTTTAGGCTGTGGGTCTTGACTCTCTGCTTGATATTTCAATCTGGACATGGGTTCTACCTTCCAGGCAGTTATCCCCACAAGTATGTAATTGGGGATGAGTTGTCGGTGAAAGTGAATTCCCTGACATCAATTGATACGGAAATGCCCTTTAGCTATTACAGTTTACCCTTTTGCAAGCCTGAGGGTGGTGTCAAGGATAGTGCTGAGAATCTCGGCGAGCTCCTCATGGGGGATCGGATCGAGAACTCTCCTTACAGATTTAAGATGTACACGAATGAGTCAGAGATTTTCTTGTGTCGGTTGGATTCATTGTCGGCAGATCAGTTCAAGATCTTGAAGGAGAGGATTGATGAGATGTATCAGGTTAATCTGATACTTGATAATTTACCTGCCATTCGGTTTACAAAGAAAGAGGAATACTTTCTACGGTGGACAGGGTACCCTGTTGGTATTAAGATTCAAGATGTATATTATCTCTTTAACCATTTGAAGTTCAATGTTCTTGTCCATAAGTATGAGGAGACCAATGTGGCTCGTGTAATGGGAACTGGTGATGCAGCTGAAGGGATGATGCCGACAGTTGGTAAGGGGGGATCAGACGTGCCTGGTTACATGGTTGTCGGGTTTGAGGTGATACCTTGCAGTATTATGCATAATGCCGATTCAGCTAAAAATTTAAAAATGTATAACAAATACCAATCACCTATCAAATGTGATCCATCCACTGTGGCAATGCCTATCAAAGAAGGCCAGCCAATTGTCTTCACCTATGAGGTCACCTTTGAGGAGAGTGACATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCAAAAGTCCATTGGTTCTCAATCCTCAATTCACTTATGGTGATCACTTTCCTTGCTGGTATTGTTCTTCTGATCTTCCTGAGGACTGTTCGGCGGGATCTGACCCGTTATGAGGAGCTTGATAAAGAGGCCCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTGGTGGGAGATGTTTTCCGTGCTCCATCTCATCCTGCCTTGTTGTGTATAATGGTTGGGGATGGGGTTCAGATTCTTGGGATGGCTGTGGTGACAATATTGTTTGCTGCACTTGGATTCATGTCCCCAGCCTCCCGTGGAACACTTATCACAGGTATGATATTTTTCTATTTGGTGCTTGGTGTTGCAGCTGGCTATGTTGCAGTTCGTCTTTGGAGGACAATTGGCTTCGGTGATCCCAAGGGCTGGGTTTCAGTTGCATGGAGGGCTGCTTGTTTCTTCCCTGGCATTGCCTTTTTGATCCTTACAACCTTGAACTTCCTATTGTGGGGAAGCCACAGTACAGGAGCCATTCCATTTTCACTCTTTGTTATACTAATCTTACTTTGGTTTTGCATTTCTGTTCCCCTTACCCTTGTTGGTGGGTACTTTGGAGCTAGGGCACCTCAGCTTGATTATCCAGTTCGAACCAATCAGATACCTAGGGAAATTCCAGCACAAAAATATCCATCATGGCTGTTAGTTCTTGGTGCCGGCACCCTCCCATTTGGTACCCTGTTTATCGAGCTCTTCTTTATCATGTCCAGTATTTGGATGGGTCGTGTTTACTATGTCTTTGGGTTTCTATTCATTGTTATGATCCTTCTTGTGGTGGTTTGTGCTGAGGTGTCTCTAGTTCTAACCTACATGCACCTCTGTGTGGAGGACTGGAAATGGTGGTGGAAATCATTTTTTGCCTCCGGTTCTGTTGCCATATACATCTTTTTGTACTCCATCAATTACCTTGTATTTGATCTCAAGAGTTTGAGTGGACCTGTTTCTGCATCTCTCTACTTGGGATACTCATTTTTCATGGTTCTAGCAATTATGTTGGCTACAGGCACAGTTGGGTTCCTCTCTTCATTCTGGTTCGTGTATTACTTGTTCTCTTCGGTCAAGTTTGATTGA 2334 0.446 MGPSTINVPHVEESFIKSDSKEAVDLCMKGCNRLHPVAKVVGLIRRNLERDWKIGIEYTCRENNRVADWLARRAQEGGEESTFLLNPPEEVVSILKEDREGHIFFCVRSATRPPMNLPKMDLCDHFRLWVLTLCLIFQSGHGFYLPGSYPHKYVIGDELSVKVNSLTSIDTEMPFSYYSLPFCKPEGGVKDSAENLGELLMGDRIENSPYRFKMYTNESEIFLCRLDSLSADQFKILKERIDEMYQVNLILDNLPAIRFTKKEEYFLRWTGYPVGIKIQDVYYLFNHLKFNVLVHKYEETNVARVMGTGDAAEGMMPTVGKGGSDVPGYMVVGFEVIPCSIMHNADSAKNLKMYNKYQSPIKCDPSTVAMPIKEGQPIVFTYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLLIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPSHPALLCIMVGDGVQILGMAVVTILFAALGFMSPASRGTLITGMIFFYLVLGVAAGYVAVRLWRTIGFGDPKGWVSVAWRAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTLVGGYFGARAPQLDYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFIVMILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLKSLSGPVSASLYLGYSFFMVLAIMLATGTVGFLSSFWFVYYLFSSVKFD 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0847 777 Coils Coil 432 452 - -
Glsi13g0847 777 Pfam Reverse transcriptase-like 12 74 IPR002156 GO:0003676|GO:0004523
Glsi13g0847 777 Pfam Endomembrane protein 70 174 730 IPR004240 GO:0016020
Glsi13g0847 777 CDD RNase_H_like 16 72 IPR044730 -
Glsi13g0847 777 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 142 777 IPR004240 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0847 Glsi-ChrGlsi13 26978534 26981842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0847 120 777 Miscellaneous Gene Families AT5G35160 84.674 0.0 1142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0847 13 26978534 26981842 Glsi13g0847 13 26978534 26981842 ECH