Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0598 ATGGCCACCGCAGAAGCAACCGAGAATGGCGCCACCAAGGCGTCAGAACCTAAGCAACAAGCAGTCACATCAGACAATGCCTCTCCCGCCGAACTAGCCACCACCAACACAGAGGCCGCTAATGTAAACGCTACACACTCCGACCCGTCACCTCCGGAACCCGAGTCTGAGTCTGCTCAGGAAGCTGATACTTCCGCCCCTCAGGTCTCTACCGCCACTGCCACTCCGCCGGAGAAGAAATGGCCGGGTTGGCCCGGGGATTGCGTGTTTCGGCTCATTGTGCCGGTTCTCAAGGTAGGTAGTATTATCGGCCGCAAGGGCGAGCTCATTAAGAAGACGTGCGAGGAGACTCGAGCGCGCATTCGCGTTCTCGACGGTGCCGTGGGCACTCCTGATCGAATTGTACTCATATCAGGGAAGGAAGAACCAGATGCACCTCTTTCCCCTGCAATGGATGCTGTAATAAGGGTATTTAAACGCGTCTCTGGATTATCTGAAAGTGACGGGGAGAATAAAGCGTCAGGACCTGCTGGGGTTGCATTTTGTTCCATTCGTTTATTGGTGGCATCAACACAGGCTATCAATTTAATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCATCTGCTCGAATATTGTCAGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAACTGCAGGGAGAAGCGTTGAAGGTCCTTAAGGCTCTGGAAGCAGTTGTTGGCCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCCTTTTTGAGAAAACTTACAATGCAACAATCTCACAAGACCGCCAAGCAGATGCCTGGGCTGACAAGTCATCACTGCATACTGCTTCACAAACTAGCATTAGTGCTGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAATCACTTGGATTCACAACTCCCCTCATCTGCAATGTCACTCTATGGGCAAGATTCTTCGCTTTCTGGTGTTCGTTCTTCAGCACTTAGTCGTGGTGCTCCCATTGTTACTACGGTGATACAAACAATGCAAATACCACTATCCTACGCTGAGGACATCATTGGAATTCAAGGGACTAATATTGCTTACATTCGACGTACCAGTGGAGCCATATTAACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATTAAAGGCACCTCATCACAGGTTCAATTGGCACAGCAGTTGATTCAGGAAGTTATAAGCAATCACAAAGAACCTGTCTCTAGCACTTATGGCAGGTTAGATGCAGGTCTGAGATCTTCTTACTCTCAGTTAGGCAGTACGTCATACTCCTCATCTTCATTGTCCTCTCAACCCTATACGGGGTATGGATCTTCTGGTTTAGGAGGTTACAGTACTTTCAGACTTTAA 1434 0.4805 MATAEATENGATKASEPKQQAVTSDNASPAELATTNTEAANVNATHSDPSPPEPESESAQEADTSAPQVSTATATPPEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTPDRIVLISGKEEPDAPLSPAMDAVIRVFKRVSGLSESDGENKASGPAGVAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASARILSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATISQDRQADAWADKSSLHTASQTSISADIPLSTKRDSLFADRENHLDSQLPSSAMSLYGQDSSLSGVRSSALSRGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVISNHKEPVSSTYGRLDAGLRSSYSQLGSTSYSSSSLSSQPYTGYGSSGLGGYSTFRL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0598 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 179 262 IPR036612 GO:0003723
Glsi13g0598 477 ProSiteProfiles Type-1 KH domain profile. 87 154 - -
Glsi13g0598 477 MobiDBLite consensus disorder prediction 1 81 - -
Glsi13g0598 477 CDD KH-I_PEPPER_rpt2_like 185 255 - -
Glsi13g0598 477 Gene3D K Homology domain, type 1 353 427 IPR036612 GO:0003723
Glsi13g0598 477 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 76 442 - -
Glsi13g0598 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 350 423 IPR036612 GO:0003723
Glsi13g0598 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 81 142 IPR036612 GO:0003723
Glsi13g0598 477 CDD KH-I_PEPPER_rpt1_like 87 155 - -
Glsi13g0598 477 ProSiteProfiles Type-1 KH domain profile. 354 417 - -
Glsi13g0598 477 SMART kh_6 180 255 IPR004087 GO:0003676
Glsi13g0598 477 SMART kh_6 86 159 IPR004087 GO:0003676
Glsi13g0598 477 SMART kh_6 353 422 IPR004087 GO:0003676
Glsi13g0598 477 MobiDBLite consensus disorder prediction 1 75 - -
Glsi13g0598 477 Pfam KH domain 184 250 IPR004088 GO:0003723
Glsi13g0598 477 Pfam KH domain 357 419 IPR004088 GO:0003723
Glsi13g0598 477 Pfam KH domain 90 142 IPR004088 GO:0003723
Glsi13g0598 477 ProSiteProfiles Type-1 KH domain profile. 181 250 - -
Glsi13g0598 477 Gene3D - 87 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0598 Glsi-ChrGlsi13 24630496 24636563 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0598 13 24630496 24636563 Glsi13g0598 13 24630496 24636563 ECH