Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0557 ATGGAGACACCGCAGCAAGGAGTGGTGAAGAAGAAGGAGACGAGGGGTCGGAAGCCGAAGCCCAAGGACGACAAGAAGGAGGAACAGCAGCAACATGGGAAGACGATGAAGGAAGGGAAGAAAGCCCCGCAGCCTCCCACTGTTGACGACAAGTACGCCCAATGGAAGACGCTTGTCCCTGTCCTCTATGACTGGCTTGCTAATCACAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGTAGTGTTCCAAACACTCTGGTCATTGCAAACTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCAGAGCACATTTCACAGTTTAACGAAGAGGCACGCTCACCATTTGTGAAGAAGTATAAGACCATCATACATCCAGGAGAGGTTAACAGAATTAGAGAATTGCCACTAAACTCCAAGATAGTGGCTACTCATACAGATAGTCCTGACGTCCTCATTTGGGATGTTGAAGCTCAACCTAACCGGCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGACATTGACTGGGCACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCTAATGAACCCTATGTGCTTTCTGGAGGAAAGGACAAATCAGTGGTTTTGTGGAGTATTCAGGACCATATAGCATCTGGTGCCACAGACTCAAAATCTGGGGAAGGCAATGATAAAACTGCTGATGGGCCATCTGTTGGACCACGAGGCATCTTTAATGGGCATGAAGATACTGTTGAAGATGTGACTTTTTGCCCTTTTAGTGCACAGGAGTTCTGTAGTGTTGGCGATGATTCTTGTCTTATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTAGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTGACTGGGTCAGCAGACAATTCTGTTCGCATGTTTGACCGCCGTAATCTTACCTCTAATGGAGTTGGGTCACCTATCCACAAGTTTGAGGGTCACAAAGATGCTGTTCTTTGTGTTCAGTGGTGTCCAGACAAATCATCTGTATTTGGGAGTTCTGCAGAAGATGGTCTCTTAAACATTTGGGATTATGAGAAGATTGGTAAAAAGATAGAGCGATCTGGAAAATCACATGCTCCAGGGTTGTTATTTCAACATGCTGGCCATAGAGACAAGGTTGTGGACTTCCACTGGAATGCATATGATCCGTGGACTATTGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATATACAGACCTGAAGAGGAGGTTTTGGCGGAGCTAGAGAAGTTTAAGTCTCATGTAGTGGAATGTGCTTCAAAGTCTGAAAAGTGA 1464 0.459 METPQQGVVKKKETRGRKPKPKDDKKEEQQQHGKTMKEGKKAPQPPTVDDKYAQWKTLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPLNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLTLTGHQDNAEFALAMCPNEPYVLSGGKDKSVVLWSIQDHIASGATDSKSGEGNDKTADGPSVGPRGIFNGHEDTVEDVTFCPFSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKDAVLCVQWCPDKSSVFGSSAEDGLLNIWDYEKIGKKIERSGKSHAPGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVECASKSEK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0557 487 MobiDBLite consensus disorder prediction 1 49 - -
Glsi13g0557 487 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515
Glsi13g0557 487 Pfam WD domain, G-beta repeat 311 343 IPR001680 GO:0005515
Glsi13g0557 487 Pfam WD domain, G-beta repeat 197 232 IPR001680 GO:0005515
Glsi13g0557 487 Pfam WD domain, G-beta repeat 353 392 IPR001680 GO:0005515
Glsi13g0557 487 SUPERFAMILY WD40 repeat-like 146 458 IPR036322 GO:0005515
Glsi13g0557 487 PANTHER WD40 REPEAT FAMILY 46 470 - -
Glsi13g0557 487 SMART WD40_4 303 343 IPR001680 GO:0005515
Glsi13g0557 487 SMART WD40_4 258 298 IPR001680 GO:0005515
Glsi13g0557 487 SMART WD40_4 192 232 IPR001680 GO:0005515
Glsi13g0557 487 SMART WD40_4 408 455 IPR001680 GO:0005515
Glsi13g0557 487 SMART WD40_4 352 392 IPR001680 GO:0005515
Glsi13g0557 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 343 - -
Glsi13g0557 487 Gene3D - 22 473 IPR015943 GO:0005515
Glsi13g0557 487 MobiDBLite consensus disorder prediction 240 266 - -
Glsi13g0557 487 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 50 116 IPR022052 -
Glsi13g0557 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 307 IPR001680 GO:0005515
Glsi13g0557 487 MobiDBLite consensus disorder prediction 1 45 - -
Glsi13g0557 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 343 IPR001680 GO:0005515
Glsi13g0557 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 394 - -
Glsi13g0557 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 394 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0557 Glsi-ChrGlsi13 24155898 24163621 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0557 13 24155898 24163621 Glsi13g0557 13 24155898 24163621 ECH