Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0548 ATGTCGAGGCTGCTTCGTAGCACTTCTCTTCTCAAACGCTCTCTTTTCTGCCATGAGGGCTTTAAACGAGGAATATTGGGCGCATCTCAAATTTTAAGCTTTTCAACTAGAGGTAGACGGGGTTCAAAATCTAATGGAAGTGATTCAAGTGAAGAAAACATGTCCAAGAAAGATCTAGCCCTACAACAAGCTCTGGATCAGATCACTTCTACTTTTGGAAAGGGATCTATCATGTGGCTTGGTCGCTCTGTTTCACCGAAACATGTACCTGTAGTGTCAACTGGTTCTTTTGCTCTTGATATAGCACTAGGAGTCGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCTGAGGCTTCTGGGAAAACGACTCTTGCTTTACATGTGATTGCAGAAGCGCAGAAGCAAGGAGGCTATTGTGTTTTTGTTGATGCTGAACATTCACTTGATAAAACACTTGCGGAATCTATTGGTGTAAATACTCAGAACTTGCTTCTCTCTCAACCTGATTGTGGTGAACAAGCACTTAGTCTTGTTGATACCTTAATCCGGAGCAGTTCGATTGATGTAATTGTTGTTGACAGCGTAGCTGCTCTTGTTCCTAAAAGTGAGCTTGACGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGGAAATTGAGCCACTCTTTGTCACTGTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGGCGAAACTTTCTACTTTTGGGGGGTTTGGTGGGCCAACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAGGCGAATGGCATTTGTTAAGAAAGGAGAAGAGACATTAGGAAGCCAGGTTATTGTCAAGGTTGTCAAGAACAAGCTTGCCCCTCCCTTTAAAACTGCACAGTTTGAGCTTGAATTTGGTAAGGGTATATGTAAAGAAGCAGAGATCTTAGATTTGAGCCTAAAATACAAATTCATCTCGAAGTCTGGTTCATTTTACCACTATAAGGATCAAAATTTCCATGGTAAGGATGCTCTTAAGAAGTTCCTGTCTGAGAATTATAGTGCACAAGAAGAACTTCTTATTAAGCTCAGGGAGAAGATTCTTAATGCTGATGCAGAAGCGGAGGCAACAGATGGAAATATTACAGAAGAAATTTTATTACCCGATTCTACTGATGAAGAAGGAGCTGCTGCTGCAGAAGCATGA 1248 0.4191 MSRLLRSTSLLKRSLFCHEGFKRGILGASQILSFSTRGRRGSKSNGSDSSEENMSKKDLALQQALDQITSTFGKGSIMWLGRSVSPKHVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHSLDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSSSIDVIVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQCILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIRRMAFVKKGEETLGSQVIVKVVKNKLAPPFKTAQFELEFGKGICKEAEILDLSLKYKFISKSGSFYHYKDQNFHGKDALKKFLSENYSAQEELLIKLREKILNADAEAEATDGNITEEILLPDSTDEEGAAAAEA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0548 415 Gene3D - 86 393 IPR027417 -
Glsi13g0548 415 PANTHER RECA 34 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 MobiDBLite consensus disorder prediction 37 56 - -
Glsi13g0548 415 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Glsi13g0548 415 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Glsi13g0548 415 SMART AAA_5 110 284 IPR003593 GO:0016887
Glsi13g0548 415 NCBIfam recombinase RecA 57 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Glsi13g0548 415 Coils Coil 360 387 - -
Glsi13g0548 415 CDD RecA 88 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Glsi13g0548 415 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Glsi13g0548 415 FunFam Recombinase RecA 86 385 - -
Glsi13g0548 415 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0548 Glsi-ChrGlsi13 24066706 24073133 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0548 13 24066706 24073133 Glsi13g0548 13 24066706 24073133 ECH