Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0506 ATGATGTTGTCAAAGATTGAAGCTGGTAAGAAGACTGGTGAGGGTTCAAGTGACGGGAAATTGTTGAAAGAAATTGAAACTATAAGCAAAGCTTTGTACTTGGAGAAAAGATTTTCAAGGAATTCAATATCTACTGCTAATGCACGATCCAAATCTACTGGGAAAACCCACTTGCCCGACCCGAAATCGAAGCCTAAAGCAAGCAATGAAGATCCTTCACGGAAGGACAAGAAGTCTATATGGAATTGGAGACCATTAAAGGCCTTTTCTCATATCCGCAATAAGAGGTTTAACTGTAGTTTTTCTCTCCAAGTCCATTTGATTGAAAGGTTACCTTCGACTTTCAATGATGCTAGCCTTTGTGTATACTGGAAGAGGCGAGATGGAGTTTTGGTGACTCGTCCAGCCAAGGTAGTTGAAGGTGCTGCTGAGTTTGAAGAGAAGTTGAATTTCACTTGCTCAGTCTATGGCAGTAGGAATGGACCCCACCATTCAGCTAAATATGAAGCAAAGCATTTTTTACTCTATGCTTCTATTCTTAGTGCACCAGAACTTGATTTGGGGAAGCACCGGGTAGATCTCACAAGGCTGCTTCCTCTTACACTGGAAGAACTTGAGGAAGAAAAGAGCTCGGGGAAGTGGACTACAAGTTTTAGATTATCAGGAATTGCCAGAGGAGCTGTAATGAATGTCAGTTTTGGGTATACTGTGGTTGGTGATAATATTAATGCTACCAGAGACAACCAGAATGCTCCTAATCTATTGACTTCAAGGCGTGCTGGAAGTTTGCCAAGTTTTACTTCTCAATATTCTTCTCGAACTGTAGATGAGGTAAAGGATCTTCACGAGGTTCTGCCCACATCAAGTTCAGCACTGGCCAGCTCAATAGACATCTTATATCAGAAATTTGATGAAGAAAAGACAAATAGTCCAGTGCATGACAAACCTGAACTTGATTCATTCACAGAGAATCTTGAGCCAGTCAAACCAAATTCCTGTCCTTCATCTGATCCGGGAAAAGAAAAATATGAAGAGTGTGCAGGTGATGAAGAAAAGAAGTGCAGTCCATTACTTGAAAAACCTGAATCTGATATTTTTCAAGAAAACCTGGAGCCAATAGATTCTGATGACTATCCTCTTGCTGACTTTGGGAAGGAAAACCCTGAAGAGTGTGAAGGTAAGTTTTCTGTTGTTGATCAGGGCATTGAATCTTCATTGAACGAACCTCTTAAATTTGAGGAAGCCACTATAGAGGCTCCTGACATTGCTTCTGCTGTTGATAGTTCCTATACCCTTGATACAGCTAGTATACAGGTATCTTCTGAATATAGTGTTAAACATGAATCTGTGGATGAGGAAAATGATACTTCTAAGGAAAAGGCTATGGTAAACAAATGTGCATACGAAGAGGATGGTTTATTCACCAAAGAACTGCTTATGCAAGAATTAGAATTAGCTTTAAATAGCGTCTCAGATTTGGAGACAGCGGCACTGGAATCTCCCAAAGATGAGAATTATATGGAAGTCAAATCTGAATATAAAATGAGAAAATCACATAGTTTGGATGATATTACAGAATCAGTCGCCAGTGAATTTTTAAGCATGCTAGGTGTTGACCATAGTCCATTTGGCTTGAGTTCTGAAAGCGAAGCTGAGTCCCCAAGAGAGCGCCTTTTAAGACAATTTGAGAAGGAAGCTTTGGCTGAGGGTTTCTCTTTATTTGATTTTGGAATGGGCGAAGATGATGAAGCAGAATGTGGCTATGATGCTACTATTGGATCTGAGCAGTTGAACTTCTCTGAGGGCCCCAGTTCTTCATCCTTGTTGCAAGATCTGCTGCAGGAGGGGTGTCCAGTTGAGTCTCAGGAAGTAAGGAGCAAACACAGGGCTCAGATGCTTGAAGACTTGGAAACGGAAGCTTTGATGCGTGAGTGGGGTTTGAATGAGGATGCTTTTCAGCATTCTCCACCAAAAGAACCTTCTGGTTTTGGAAGTCCTATTCACTTACCCTCGGAAGAGCCTCTTACTTTGCCTCCTCTTGCAGAGGGGTTAGGTCCTTTTCTTCAGACAAAAGATGGGGGATTTGTACGGACTATGGATCCCTCACATTTCAGGAATGCTAAAAGTGGTGGGAGTTTGATTATGCAAGTTTCCAACCCAGTTGTGGTTCCTGCAGAAATGGGTTCTGGGACAATTGAGATTTTGCAGTGTTTGGCGTCATTGGGAATTGAAAAGCTCTCAATGCAGGCAAATAAGTTAATGCCTCTGGAGGATATCACAGGGAAGACGATGCAACAAGTGGCATGGGAAGCTATGCCTGTCTTGGAGGGAACAGAGAGGGAATGTCTATTGCAGCATGATTTGGTGACAGGCCAAGATACTACTTGTGTGCAAAGGGGTTTGAAAGGAAAATCATCTGGGCCCAAGGCTAATAAGTTTAATTCAAGCTCAGTAGGCCAGCAGGCAGGCACAGAATTCGCTTCATTGGAAGATCTTGCTCCACTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGCTTGAGAATACAATCTGGGATGTCTGATCAGGACGCACCATCAAACATCATTGCACAATCCATTGGGGATATTTCAGCTTTCCAGGGCAAGGGGGTTAATATTAATGGGTCCCTTGGCCTGGATGGAGCCGCTGGTTTGCAGTTGATGGATATAAAAGATAGCAGCGATGGTGTTGATGGGATTATGGGCCTATCCTTAACTCTGGATGAATGGATGAGGTTGGATTCTGGCGAGTTTGATGATATAGATAATATCAGTGAGCATACATCCAAAATTCTTGCTGCCCATCATGCTCACTCTTCTGACTTAATTCGTGGGAGTTCCAAGGGAGAGAAGAAAAGAGGCAAAGGGCATGGCAGAAAGTGTGGTTTGTTAGGAAATAATTTTACAGTTGCATTGATGGTGCAACTTCGTGATCCTCTTAGAGATTATGAGTCTGTTGGAACACCAATGCTTGCTCTGATACAAGTTGAGAGAGTTTTTGTTCCTCCAAAGCCAAAAATTTACTGCAATGTGTCTGAGATTAGGAACAACAATGACGAAGATGATGAGACCGAAACAAAAGTGAAGGTGGATTTGAAGGATGACAAGAAGGAAGAGAAAACTTCTGAGGAGGAGGGCATTCCTCAGTTCAGAATTACTGAAGTCAATGTTGCAGGTCTAACTACGGAGCCTCGCAAAAAGAAGCTTTGGGGTACTTCAACCAATCAACAATCTGGTTCCCGCTGGTTGCTTGCTAATGGGATGGGGAAGAGCAATAAGCATCCATTAATGAAGTCAAAGGCTGCGTCAAAATCTAGTGCTACGGGTATGACAGCAGTGCAACCAGGTGATACATTGTGGAGTATATCGTCTCGTGTTTATGGTACTGGAACAAAATGGAAGGAATTGCAAGCACTAAATCCGCATATAAGAAACCCCAACGTCATAATATCAAATGAAACCATAAGATTGCGCTGA 3501 0.4233 MMLSKIEAGKKTGEGSSDGKLLKEIETISKALYLEKRFSRNSISTANARSKSTGKTHLPDPKSKPKASNEDPSRKDKKSIWNWRPLKAFSHIRNKRFNCSFSLQVHLIERLPSTFNDASLCVYWKRRDGVLVTRPAKVVEGAAEFEEKLNFTCSVYGSRNGPHHSAKYEAKHFLLYASILSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGIARGAVMNVSFGYTVVGDNINATRDNQNAPNLLTSRRAGSLPSFTSQYSSRTVDEVKDLHEVLPTSSSALASSIDILYQKFDEEKTNSPVHDKPELDSFTENLEPVKPNSCPSSDPGKEKYEECAGDEEKKCSPLLEKPESDIFQENLEPIDSDDYPLADFGKENPEECEGKFSVVDQGIESSLNEPLKFEEATIEAPDIASAVDSSYTLDTASIQVSSEYSVKHESVDEENDTSKEKAMVNKCAYEEDGLFTKELLMQELELALNSVSDLETAALESPKDENYMEVKSEYKMRKSHSLDDITESVASEFLSMLGVDHSPFGLSSESEAESPRERLLRQFEKEALAEGFSLFDFGMGEDDEAECGYDATIGSEQLNFSEGPSSSSLLQDLLQEGCPVESQEVRSKHRAQMLEDLETEALMREWGLNEDAFQHSPPKEPSGFGSPIHLPSEEPLTLPPLAEGLGPFLQTKDGGFVRTMDPSHFRNAKSGGSLIMQVSNPVVVPAEMGSGTIEILQCLASLGIEKLSMQANKLMPLEDITGKTMQQVAWEAMPVLEGTERECLLQHDLVTGQDTTCVQRGLKGKSSGPKANKFNSSSVGQQAGTEFASLEDLAPLAMDKIEALSMEGLRIQSGMSDQDAPSNIIAQSIGDISAFQGKGVNINGSLGLDGAAGLQLMDIKDSSDGVDGIMGLSLTLDEWMRLDSGEFDDIDNISEHTSKILAAHHAHSSDLIRGSSKGEKKRGKGHGRKCGLLGNNFTVALMVQLRDPLRDYESVGTPMLALIQVERVFVPPKPKIYCNVSEIRNNNDEDDETETKVKVDLKDDKKEEKTSEEEGIPQFRITEVNVAGLTTEPRKKKLWGTSTNQQSGSRWLLANGMGKSNKHPLMKSKAASKSSATGMTAVQPGDTLWSISSRVYGTGTKWKELQALNPHIRNPNVIISNETIRLR 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0506 1166 SMART LysM_2 1118 1166 IPR018392 -
Glsi13g0506 1166 Gene3D LysM domain 1108 1166 IPR036779 -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 307 343 - -
Glsi13g0506 1166 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1160 IPR039614 -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 44 76 - -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 947 967 - -
Glsi13g0506 1166 CDD LysM 1121 1165 IPR018392 -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 1025 1054 - -
Glsi13g0506 1166 Pfam LysM domain 1121 1164 IPR018392 -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 55 76 - -
Glsi13g0506 1166 MobiDBLite consensus disorder prediction 307 322 - -
Glsi13g0506 1166 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 94 238 IPR019448 -
Glsi13g0506 1166 ProSiteProfiles C2 NT-type domain profile. 89 237 IPR019448 -
Glsi13g0506 1166 ProSiteProfiles LysM domain profile. 1117 1165 IPR018392 -
Glsi13g0506 1166 Coils Coil 476 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0506 Glsi-ChrGlsi13 23748604 23752203 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0506 13 23748604 23752203 Glsi13g0506 13 23748604 23752203 ECH