Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2779 ATGACAGAACACGGTATTCTCAATAAAAGTTGTACCAATCGAAAAGGCCCCCGAATGGACCCACCTTTTGGAATTTGGAACAGGGACTTGGGACGTGCCACCAACTGCTCAGTGCTAAGTATACCAAATCATATTTTAGGTCTCCCACTTGGCAATGCTAAAATTCCACCACCGCATCGTGTGTCCTTCAACCCTCCCTCTCCTTCCCAACCATTTCCCCCTTTCTCTCGTTCTACTTCTATCTCTTCGGCCATGGATCCCGTTTCCGACTGGGGAAACACACCTCTCCAAACCGTCGACCCAGAAATCCACGACCTTATTGAGAAGGAGAAGCGCCGCCAATGCCGCGGCATCGAGCTCATTGCATCGGAAAACTTCACTTCCTTCGCCGTTATCGAGGCCCTCGGCAGTGCCTTGACCAACAAGTACTCTGAGGGCATGCCCGGCAACCGTTACTACGGTGGCAATGAGTACATCGACCAAATCGAGAACCTTTGCAGGTCTCGTGCTCTTCAGGCCTTCCACGTCGATCCTACCAAGTGGGGTGTCAATGTTCAACCATACTCCGGTTCGCCGGCAAATTTCGCTGCCTACACGGCTGTGCTTCAACCCCATGACCGCATCATGGGGTTGGATCTACCTTCTGGTGGCCATTTGACTCATGGCTACTACACCGCTGGAGGTAAGAAGATCTCTGCAACCTCGATTTATTTCGAGAGTTTGCCATACAAGGTGAATTCGAGCACTGGCTACATTGACTATGACAAGCTGGAGGAGAAGGCTTTGGATTTCAGACCTAAGTTGATCATTTGTGGTGGAAGTGCATATCCTAGGGACTGGGATTATGCAAGGTTCCGGCAGATTGCCGATAAGTGTGGCGCACTCTTGCTTTGTGATATGGCACACATTAGTGGTCTTGTTGCTGCTCAGGAAGCTGCTAACCCCTTCGAGTACTGTGACTTGGTCACGACAACAACCCACAAGAGCTTGAGAGGTCCCAGGGCAGGTATGATCTTCTACCGGAAAGGTCCTAAACCACCCAAGAAGGGCCAGCCCGAGGATGCAGTTTATGACTTTGAAGACAAGATCAATTTTGCTGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAATCACCAGATTGGTGCCCTTGCTGTTGCTCTGAAACAGGCTATGTTGCCTGGGTTCAAGGCCTATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCCTTGGAAATTACTTGATGAGCAAGGGATACAAGCTTGTCACTGGGGGAACTGAGAACCATCTTGTCTTGTGGGATCTCCGGCCTCTTGGTTTGACTGGCAATAAGGTGGAGAAACTTTGTGACCTCTGTAACATTACTGTGAACAAAAATGCTGTCTTTGGCGATAGCAGTGCTTTGGCTCCTGGAGGAGTTCGCATTGGTACTCCGGCCATGACTTCTAGAGGTTTGGTTGAAAAGGACTTTGAGCAGATTGGTGAGTTCCTTCACCGTGCAGTGACTCTAACATTGGAGATCCAGAAGCAGTATGGCAAACTTTTGAAGGACTTCAACAAGGGGTTGGAGGGGAACAAGGATATTGAAGCGCTCAAGGCTGATGTGGAGAAGTTTTCATCCTCATTTGACATGCCCGGTTTCCTGGTATCCGAGATGAAGTACAAGGATTAG 1668 0.4976 MTEHGILNKSCTNRKGPRMDPPFGIWNRDLGRATNCSVLSIPNHILGLPLGNAKIPPPHRVSFNPPSPSQPFPPFSRSTSISSAMDPVSDWGNTPLQTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDQIENLCRSRALQAFHVDPTKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRQIADKCGALLLCDMAHISGLVAAQEAANPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMLPGFKAYAKQVKANAVALGNYLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKQYGKLLKDFNKGLEGNKDIEALKADVEKFSSSFDMPGFLVSEMKYKD 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2779 555 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 320 336 IPR019798 GO:0030170
Glsi12g2779 555 MobiDBLite consensus disorder prediction 1 20 - -
Glsi12g2779 555 Pfam Serine hydroxymethyltransferase 96 495 IPR039429 -
Glsi12g2779 555 SUPERFAMILY PLP-dependent transferases 88 547 IPR015424 -
Glsi12g2779 555 MobiDBLite consensus disorder prediction 59 79 - -
Glsi12g2779 555 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 93 547 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Glsi12g2779 555 FunFam Serine hydroxymethyltransferase 125 400 - -
Glsi12g2779 555 FunFam Serine hydroxymethyltransferase 395 544 - -
Glsi12g2779 555 MobiDBLite consensus disorder prediction 59 73 - -
Glsi12g2779 555 Gene3D Aspartate Aminotransferase, domain 1 100 544 IPR015422 GO:0003824
Glsi12g2779 555 CDD SHMT 99 537 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Glsi12g2779 555 Gene3D - 125 400 IPR015421 GO:0003824
Glsi12g2779 555 Hamap Serine hydroxymethyltransferase [glyA]. 95 545 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2779 Glsi-ChrGlsi12 41010530 41015784 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2779 12 41010530 41015784 Glsi12g2779 12 41010530 41015784 ECH