Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2758 ATGTCAGCATGTGTCAGTGTCATGTCATCGCGGCAAAAGGCCGCGTCTTCACATTCCAATTCCATAAACTGGACAATGTTGCTCCCACTCTATAACTTGCAAACTGGTATTGCTTTAATTGAAGGACATGCTTCTTCCTGTCGCCTTTTCCGCTGCGCAGCCATGGTGGTTTCCTTTTCTACTGCGATCTCACATTCCACTCGCATTTTCCCTTCAAACACTCTATCCCACCAGCAGAGGAATATCTACGAATCTCAATGCCATCCTTTCCCCCTCCTACCGCAGCGTTCACATTTTCTTCGAAAGGGTCTTACTTTACCATGGGGAAGAGAGACAGTAAGCACCAGGATATGTGGTTCACTTACAGATTATTCAAAGGATGTATCTGTGGAGGAAAAACAGCTTCCCAAAGGAGAAACTTGGTCTGTTCACAAATTTGGAGGAACCTGTGTGGGAAGCTCACAAAGAATTAAGAACGTTGCAGATATAATAATTAATGATGCTTCAGAGAGGAAATTCGTGATTGTCTCTGCAATGTCAAAGGTAACAGATATGATGTATGACCTTATTTACAAGGCTCAATCACGTGATGAGGCCTATATATCTGCACTGGATGTTGTTTTAGAGAAGCACAGCTCTACTGCACATGATCTACTTGATGGACATGATCTTGCTCTTTTCTTATCAAAGTTGCATGACGACATCAGTAACCTTAAGGCAATGCTTCGTGCAATTTACATAGCTGGTCATGCAACAGAATCCTTTACAGATTTTGTTGTGGGACATGGGGAGTTATGGTCTGCTCATATGTTGTCTTCAGTTATACGGAAGAATGGGACTAATTGCAAATGGATGGATACAAGGGAAGTCCTTATTGTAAATCCTACTAGTTCTAATCAAGTTGATCCTGACTATTTGGAATCTGAGCGAAGACTTGAGAAATGGTACTCTTTGAATCCATCCAAGGTAATCATTGCTACTGGATTTATTGCAAGCACACCTCAAAATATTCCTACAACACTGAAGCGAGATGGAAGTGATTTCTCAGCAGCAATCATGGGTGCTCTATTTAGGGCTCGTCAGGTCACAATTTGGACAGATGTTGATGGTGTATATAGTGCAGATCCTAGAAAAGTTAGCGAGGCTGTAATTTTAAAGACATTGTCCTATCAAGAGGCCTGGGAAATGTCTTATTTTGGTGCAAATGTTTTACATCCCCGTACAATAATTCCAGTGATGCGATATGGCATACCCATTATAATAAGGAACATTTTCAACCTTTCTGCCCTTGGAACAAAGATCTGCCACTCCTCTGTCAATGATGATGAAGATATGCAAAACTTAAGTTATTTTGTTAAAGGGTTTGCGACAATAGACAACTTGGCACTTGTAAATGTTGAGGGAACTGGAATGGCTGGTGTTCCCGGTACAGCCAGTGCTATTTTTGAGGCTGTAAAAGAAGTTGGAGCAAATGTTATCATGATATCTCAGGCTAGTAGTGAGCATTCTGTGTGCTTTGCTGTACCTGAGAAGGAAGTAAAAGCTGTTGCTGAAGCATTGCAGTCCAGATTTCGTCGAGCTTTGGATGCCGGGCGTCTATCTCAGGTTGCAGTTATTCCAAACTGTAGCATTTTGGCTACTGTTGGTCAGAAAATGGCAAGTACTCCTGGAGTTAGCGCTTCCCTATTCAATGCATTGGCTAAGGCCAATATTAATGTCCGGGCTATAGCACAAGGTTGTTCTGAGTACAATATTACTGTTGTTGTTAAGCGAGAAGATTGTATAAAGGCTCTTCGGGCAGTCCATTCAAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGACCTGGATTAATTGGGAGTACACTACTTGACCAGCTAAGGGATCAGGCTGCAGTTCTGAAAGAAGAATTTAACATTGATTTGCGTGTAATGGGCATCATTGGTTCAAAGTCAATGCTTCTTAGTGATCTGGGTATTGACTTAGCTGGGTGGACAAAACTTCGAGACGATAAAGGAGAAGTGGCTAATTTGGAAAAGTTTGTTCAACATGTGCATGGAAATCATTTTATACCAAACACTGTTTTAGTGGACTGCACAGCTGACTCCATCATTGCAGGCCATTACTTTGAATGGTTGCGCAAAGGAATACATGTAATCACCCCCAATAAAAAGGCAAATTCAGGACCACTTGATCAGTATTTGAGGTTAAGAGCTCTTCAAAGGCAATCCTATACACACTATTTCTATGAAGCTACTGTTGGGGCTGGTCTTCCAATTATTAGCACTTTACGGGGACTTCTTGAAACTGGAGACAGAATATTGCAAATTGAAGGCATCTTCAGTGGGACTTTGAGTTACATCTTTAATAACTTCAAAGAGGGCCAGCTTTTTAGTGAGGTAGTTGCTGAAGCAAAGGAAGCTGGTTATACTGAGCCAGATCCAAGGGATGATCTGTCTGGAACAGATGTTGCTAGAAAGGTGATAATTCTTGCAAGGGAATCTGGTCTAAAGCTTGAACTATCTGATATTCCTGTCGAGAGCCTTGTGCCAGAACCACTTAGAGCTAGTGCATCAGCTCAGGACTTTATGCAAGAGCTACCAAAATTTGACCAGGAATCAACAAAGAAACTACGAGATGCTGAGAATGCAGGGGAAGTCTTGAGATACGTGGGGGTGGTGGATGTGAGTAATCAGAAAGGAGTGGTAGAGCTGCGAAGATACAAAAAGGATCATCCATTTGCACAACTATCTGGATCGGATAATATTATTGCATTTACAACAAGAAGGTATAAGAATCAGCCTCTGATAGTTCGTGGACCAGGAGCTGGTGCTCAAGTGACAGCTGGTGGGATATTCAGTGACATTTTACGACTTGCCTCGTATCTTGGTGCACCATCATAG 2913 0.4195 MSACVSVMSSRQKAASSHSNSINWTMLLPLYNLQTGIALIEGHASSCRLFRCAAMVVSFSTAISHSTRIFPSNTLSHQQRNIYESQCHPFPLLPQRSHFLRKGLTLPWGRETVSTRICGSLTDYSKDVSVEEKQLPKGETWSVHKFGGTCVGSSQRIKNVADIIINDASERKFVIVSAMSKVTDMMYDLIYKAQSRDEAYISALDVVLEKHSSTAHDLLDGHDLALFLSKLHDDISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAHMLSSVIRKNGTNCKWMDTREVLIVNPTSSNQVDPDYLESERRLEKWYSLNPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIIIRNIFNLSALGTKICHSSVNDDEDMQNLSYFVKGFATIDNLALVNVEGTGMAGVPGTASAIFEAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRRALDAGRLSQVAVIPNCSILATVGQKMASTPGVSASLFNALAKANINVRAIAQGCSEYNITVVVKREDCIKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLDQLRDQAAVLKEEFNIDLRVMGIIGSKSMLLSDLGIDLAGWTKLRDDKGEVANLEKFVQHVHGNHFIPNTVLVDCTADSIIAGHYFEWLRKGIHVITPNKKANSGPLDQYLRLRALQRQSYTHYFYEATVGAGLPIISTLRGLLETGDRILQIEGIFSGTLSYIFNNFKEGQLFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVESLVPEPLRASASAQDFMQELPKFDQESTKKLRDAENAGEVLRYVGVVDVSNQKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2758 970 CDD ACT_AKi-HSDH-ThrA-like_1 461 540 - -
Glsi12g2758 970 ProSitePatterns Homoserine dehydrogenase signature. 808 830 IPR019811 GO:0006520
Glsi12g2758 970 CDD ACT_AKi-HSDH-ThrA_2 542 607 - -
Glsi12g2758 970 Pfam ACT domain 540 603 IPR027795 -
Glsi12g2758 970 ProSiteProfiles ACT domain profile. 466 541 IPR002912 -
Glsi12g2758 970 Pfam Homoserine dehydrogenase, NAD binding domain 618 754 IPR005106 GO:0016491|GO:0050661
Glsi12g2758 970 PANTHER - 127 970 IPR011147 GO:0004072|GO:0004412|GO:0009067
Glsi12g2758 970 Gene3D Dihydrodipicolinate Reductase; domain 2 773 944 - -
Glsi12g2758 970 SUPERFAMILY ACT-like 450 525 IPR045865 -
Glsi12g2758 970 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 610 784 IPR036291 -
Glsi12g2758 970 Pfam Homoserine dehydrogenase 762 960 IPR001342 GO:0006520
Glsi12g2758 970 NCBIfam aspartate kinase 141 605 IPR001341 GO:0004072|GO:0008652
Glsi12g2758 970 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 773 944 - -
Glsi12g2758 970 ProSiteProfiles ACT domain profile. 547 624 IPR002912 -
Glsi12g2758 970 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 762 947 - -
Glsi12g2758 970 Pfam Amino acid kinase family 142 423 IPR001048 -
Glsi12g2758 970 CDD AAK_AK-HSDH 141 435 IPR041743 -
Glsi12g2758 970 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 140 437 - -
Glsi12g2758 970 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 613 789 - -
Glsi12g2758 970 SUPERFAMILY Carbamate kinase-like 142 436 IPR036393 -
Glsi12g2758 970 Gene3D - 613 962 - -
Glsi12g2758 970 Gene3D - 449 607 - -
Glsi12g2758 970 SUPERFAMILY ACT-like 532 621 IPR045865 -
Glsi12g2758 970 Pfam ACT domain 470 524 IPR002912 -
Glsi12g2758 970 Gene3D - 141 437 IPR036393 -
Glsi12g2758 970 ProSitePatterns Aspartokinase signature. 143 151 IPR018042 GO:0004072|GO:0008652
Glsi12g2758 970 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 449 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2758 Glsi-ChrGlsi12 40876201 40888802 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2758 12 40876201 40888802 Glsi12g2758 12 40876201 40888802 ECH