Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2309 ATGGGTAAAGGCGTCGTCTCAGACGATGAAGACGAGGTCGAACTCGAAGAGGATGAGAGGGAGCCGGCTGATGGAGAAGGATTAGACGACCGCGATATGGATGACGATGAAGAGGACGAAGAAGAGGAAGGTCAGGATGAATATGAAAAGGATGGATTTATAGTGGATGACATAGAGGAAGAAGAGGAACAAGATGAGGAAGAGAGGGCGGAAAGCGATGAGGAGCGGCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGCTCTTGGAGGATAATAATATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAAGGTCAGAGGGATACTGAGGATGAACCCTCTGGGTTATCTGATGAGGAGGAATTTGTTGGAAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTGTTTGGTGATGACGAAGGACCTCCACTTGAAGATATTGCGGAAGAGGAGGAACAGGGAGAAGAAGAGGAAGATGCTGACATTGGTGAAGATGATGAAATGGCGGACTTCATTGTGGATGAGGAAGAAGTTGACGAGCATGGAGCTCCAATGAGACGAAGGAAGCTGAAGAGAAAGAAAATTAGGCAGGCACCAGGAATCTCGTCCTCTGCGTTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTGCTGCAATCGCGCAAGCAAAGTCTAGAATTACGCGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCAATTGTTCTTTCTGAGAAGTATATGACAGAGAAGGATGACCAGATTAGGGAGCTTGATATTCCAGAAAGAATGCAGATATCAGAGGAGAGTACTGGTGCACCTCCACTAGACGCAGCTAGTATAAAGGAAGAGAGTAATTGGATATGTGAGCAACTTAAAAAGGGAATGGTACCTTGGATTCACAAGAAAGATACAAGCAATTTACCAATTGACAGTCATGATATCATCAGATTTTTGGAACTGCATCATGTGCAGAAATTAGATATTCCTTTTATTACTATGTATCGGAAGGAGGAGTGCTTAAGCCTATTGAAAAATTATCAGCAACCTGAAGCTGATGATAATTGGGATAAGAATGAAAAGACACCTACATTAAAATGGCACAAGGTACTTTGGGCAATTCAGGACTTGGACCGAAAGTGGTTGCTTCTTCAGAAACGAAAGAGTGCCCTCCAAGCATACTATAATAAACGGTTTGAAGAAGAGTCCCGCCGTATTTATGATGAAACTAGACTTGATTTGAATCAGCAATTGTTCGAATCAGTTATGAGATCACTGAAGGCTGCAGAAACAGAGAGAGAGGTTGATGATGTGGACTCAAAATTTAACTTACATTTCCCTCCAGGTGAAGCTGGTGTTGACGAAGGGCAATATAAGAGACCAAAGAGGAAATCAACATATGGTTCGTTCAGTAAGGCTGGGCTGTGGGAGGTTGCAAGCAAGTTTGGGCGGAGTTCTGAGCAACTTGGATCGATCCTGTCACTAGAAAGAATGGGTAATGAGTTGGAGGATCCTAAGGAAACTCCAGAGGAGATGGCTTCAAACTTTACATGTGCTATGTGTGATACACCTCAAGAAGTACTCAAATGTGCTAGACACATGGCAGCTGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAATTTTATTGATCATGCTGTGGTGTCAACTTGTCCCACTGCTGATGGAAATGTAACTATCGATTCTTTCCATCAGTTTGCTGGGGTAAAGTGGTTGCGAGAGAAGCCTTTGTCTAAATTTGATGATGGACAATGGCTTCTTATAGTGAAGGCTGAAGAGGAAAAACTCCTTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTGAGAAGTTGACAAACGAATTCAATATTTATTATATTAGTGACAGTGTTAGTAGATCTGCCCAACTTTGGAATGAACAGAGGAAGCTGATACTACATGATGCAATTTTTCGCTTTCTTTTACCATCAATGGAAAAAGAGGCTAGAGCCTTCTTGACAAGCAAAGCTAAAAATTGGTTACTTATGGAGTATGGGAAAGCCTTATGGAATAAGGTCTCTGTGGGACCTTATCAACGGAAGGATAATGATCTTAGCTCTGATGATGAAGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCCGGAAAGCCACAAACAACTTTTGTAATGTTAGATTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGGTCCCTTACATTACGATCTCAGAATGTTAATGACCAGCAACGGAAGAAAAATGACCAGGAACGTGTGTTGAAGTTCATGACAGACCACCAACCGCATGTTGTTGTTTTAGGAGCAGTGAATTTGTCTTGTACTCGTTTGAAGGATGATATATACGAGATCATTTTTAAAATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGAGATGGATGGCCTCAGCATTGTGTATGGGGATGAATCTCTTCCCCATCTGTATGAAAATTCTCGAATTTCCTCAGAACAACTTCCTTCACAGCAAGGTATAGTGAGACGGGCTGTAGCACTTGGCAGGTATCTTCAGAATCCCTTGGCAATGGTTGCGACATTGTGTGGACCTAGGAAAGAAATATTATCATGGAAACTGAGCTCTTTGGAGAACTTTCTCAACCCTGATGAGAAATTTGGGATGGTCGAGCAGATTATGGTAGATGTGACCAATCAGGTGGGCCTAGATATTAATTTAGCCATAAGTCATGAGTGGTTATTTTCTCCCTTACAGTTTATTTCTGGGCTTGGTCCGAGAAAGGCTGCATCCTTACAGAGGTCCTTGGTAAGAGCTGGAGCAATTTTTACTCGGAAGGACTTTGTGACAGAACATAAACTGGGTAAGAAGGTATTTGTCAATGCAGTAGGTTTCTTGCGCGTCCGGCGGAGTGGGTTGGCTGCTAGTAGCAGCCAATTTATCGATTTGCTAGATGATACAAGAATTCATCCAGAATCATATACACTTGCGCAAGAGTTGGCTAAAGATGTGTATGAAGCCGATGGCTCAGGTGATGCCAATGATGATGATGATGCACTGGAGATGGCTATAGAGCATGTGAGAGACCGGCCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTGCAGGGAAGAAGCGGCAGAACAAAATAGAAACTTTCTATGACATAAAAAGAGAATTGATTCAGGGTTTTCAGGATTGGCGTAAACAATATGAAGAACCAAATCAAGATGAGGAATTCTATATGCTTTCAGGTGAAACTGAGGAGACCCTTGCTGAAGGGAAAATTGTCCAAGCTACAATTCGCAGAGTGCAAGCCCAAAAAGCAATATGTGAGCTTGAATCTGGGTTGACTGGAATCCTAATGAAAGAAGACTACACTGATGACTGGAGGGATTTAGTTGAGTTATCTGACAGGCTGCATGAAGGTGACATTCTCACCTGCAAAATTAAAGCAATTCAGAAGAATAGGAATCAAGTATTCCTTGTCTGTAGGGAGAGTGAAATGAGAAGTAATCGTTTACAGAATAACCATAATCTTGACCCTTATTACCATGAAGACCGGAGCTGTCTACAGAGTGAACAAGACAAAGCTCGCAAAGCAAAAGAGCTTGCTAAGAAGCATTTCAAGCCAAGGATGATAGTTCATCCACGTTTCCAAAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATTTTGGAGAAAGTATTATCCGGCCTAGTTCACGGGGACCTTCGTTTCTTACTCTAACTCTCAAAATCTATGACGGTGTTTATGCCCACAAAGATATAGTTGAAGGTGGAAAGGAACACAAAGACATCACAAGCTTACTTCGAATTGGGAAGACACTAAAAATTGGAGAGGATACTTTTGAGGATTTAGATGAGGTAATGGACCGGTATGTTGATCCCTTGGTGACTCACCTTAAAACAATGTTAAATTATCGTAAGTTCAGGAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGTTGGAGAAAGCAGAGTCTCCTATGCGGATAGTCTACAGTTTTGGCATTTACCATGAACATCCTGGCACATTCATATTAACTTATATAAGAAGCACAAATCCACACCATGAATACATTGGGCTTTATCCAAAAGGATTCAAGTTCCGGAAAAGGATGTTTGAGGACATTGATAGGCTTGTGGCATATTTTCAGCGGCATATTGATGATCCCCAGCATGAATTAGCCCCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGTCCTGCCGCCGGTGGCTCATCGGGGGCATCAGTAGGCAGTGGCTGGGGTGGTTCTAAAAACGAGGGTGGCTGGAGAGGTCACTCTGGTGATAGGGATAGATCATCTACACCAGGTTCCAGGACAGGGCGAACTGATTACAGAAACAATGGGAATCGAGATGACCACCCTAGTGGACTACCTCGCCCATATGGTGGTGCACGTGGACGGGGACGTGGACAAGGCTCTTATAATAACAGTCGAGGAAACAGCTCCAATAATGAAAGACAGGACTCTGGTTATAGTGCAGCCAGATGGGGTTCTGATGCAAAGGATGGAGATGATAGTTTAAGCAATTTTCCAGGAGCCAAGGCAGTGGAGGCAGTGGTTGGGGTGGTGGAAGTGGAGGCAGTGGTTGGGGTGTTGCAGCCAACACCAGTGAAAATGTTGGCTGGGGACATTGAGGGGGTGGTGCGGGTGCAAGTGATGCTGAGCGTGGAAGCTCCGGCTGGGGGAGTGGTCCCAAGAGATCTGAGAGTGGTTGGTCTAGAAATACTGGCGGTGGCAGTGGCTGGTGAACCCAGAGAACACATCCGGCTTCCCTACATTAATTAA 4941 0.4345 MGKGVVSDDEDEVELEEDEREPADGEGLDDRDMDDDEEDEEEEGQDEYEKDGFIVDDIEEEEEQDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEDEPSGLSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGPPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDEHGAPMRRRKLKRKKIRQAPGISSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPIVLSEKYMTEKDDQIRELDIPERMQISEESTGAPPLDAASIKEESNWICEQLKKGMVPWIHKKDTSNLPIDSHDIIRFLELHHVQKLDIPFITMYRKEECLSLLKNYQQPEADDNWDKNEKTPTLKWHKVLWAIQDLDRKWLLLQKRKSALQAYYNKRFEEESRRIYDETRLDLNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSTYGSFSKAGLWEVASKFGRSSEQLGSILSLERMGNELEDPKETPEEMASNFTCAMCDTPQEVLKCARHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPTADGNVTIDSFHQFAGVKWLREKPLSKFDDGQWLLIVKAEEEKLLQVTIKLPEEYLEKLTNEFNIYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARAFLTSKAKNWLLMEYGKALWNKVSVGPYQRKDNDLSSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLENFLNPDEKFGMVEQIMVDVTNQVGLDINLAISHEWLFSPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYEADGSGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYAAGKKRQNKIETFYDIKRELIQGFQDWRKQYEEPNQDEEFYMLSGETEETLAEGKIVQATIRRVQAQKAICELESGLTGILMKEDYTDDWRDLVELSDRLHEGDILTCKIKAIQKNRNQVFLVCRESEMRSNRLQNNHNLDPYYHEDRSCLQSEQDKARKAKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKTMLNYRKFRKGTKAEVDELLRLEKAESPMRIVYSFGIYHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHELAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGSKNEGGWRGHSGDRDRSSTPGSRTGRTDYRNNGNRDDHPSGLPRPYGGARGRGRGQGSYNNSRGNSSNNERQDSGYSAARWGSDAKDGDDSLSNFPGAKAVEAVVGVVEVEAVVGVLQPTPVKMLAGDIEGVVRVQVMLSVEAPAGGVVPRDLRVVGLEILAVAVAGEPREHIRLPYIN 1646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2309 1646 Pfam SH2 domain 1210 1427 IPR035420 -
Glsi12g2309 1646 CDD SH2_Cterm_SPT6_like 1342 1428 IPR035018 -
Glsi12g2309 1646 Gene3D - 1114 1202 IPR012340 -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 294 477 - -
Glsi12g2309 1646 Pfam Acidic N-terminal SPT6 34 123 IPR028083 -
Glsi12g2309 1646 Pfam HHH domain 1008 1095 IPR041692 -
Glsi12g2309 1646 Pfam Holliday-junction resolvase-like of SPT6 732 888 IPR028231 -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 138 160 - -
Glsi12g2309 1646 Gene3D - 294 488 IPR023319 -
Glsi12g2309 1646 Gene3D - 489 926 IPR023323 -
Glsi12g2309 1646 Coils Coil 55 87 - -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 1522 1543 - -
Glsi12g2309 1646 PIRSF Spt6 3 1498 IPR017072 GO:0032968
Glsi12g2309 1646 SMART S1_6 1119 1192 IPR022967 -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 899 996 - -
Glsi12g2309 1646 SUPERFAMILY Ribonuclease H-like 733 888 IPR012337 -
Glsi12g2309 1646 SUPERFAMILY SH2 domain 1246 1332 IPR036860 -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 723 893 - -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 162 197 - -
Glsi12g2309 1646 ProSiteProfiles S1 domain profile. 1121 1192 IPR003029 GO:0003676
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 1114 1202 - -
Glsi12g2309 1646 SUPERFAMILY RuvA domain 2-like 903 994 IPR010994 -
Glsi12g2309 1646 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 10 1495 IPR017072 GO:0032968
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 9 70 - -
Glsi12g2309 1646 Gene3D SH2 domain 1229 1340 IPR036860 -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 71 91 - -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 1229 1340 - -
Glsi12g2309 1646 FunFam Transcription elongation factor Spt6 1000 1094 - -
Glsi12g2309 1646 Gene3D - 261 996 - -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 1341 1433 - -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 1474 1488 - -
Glsi12g2309 1646 Gene3D - 1002 1094 IPR042066 -
Glsi12g2309 1646 Gene3D SH2 domain 1341 1436 IPR036860 -
Glsi12g2309 1646 Gene3D - 723 1113 IPR037027 GO:0006139
Glsi12g2309 1646 SUPERFAMILY RuvA domain 2-like 1007 1096 IPR010994 -
Glsi12g2309 1646 SUPERFAMILY Tex N-terminal region-like 323 712 - -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 1 223 - -
Glsi12g2309 1646 MobiDBLite consensus disorder prediction 1450 1557 - -
Glsi12g2309 1646 FunFam Transcription elongation factor spt6 480 741 - -
Glsi12g2309 1646 Pfam Helix-hairpin-helix motif 892 993 IPR032706 -
Glsi12g2309 1646 SMART rnase_8s 733 851 IPR006641 GO:0006139
Glsi12g2309 1646 CDD SH2_Nterm_SPT6_like 1243 1331 IPR035019 -
Glsi12g2309 1646 SUPERFAMILY Nucleic acid-binding proteins 1116 1196 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2309 Glsi-ChrGlsi12 37443670 37453504 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2309 12 37443670 37453504 Glsi12g2309 12 37443670 37453504 ECH