Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2246 ATGGACTCCAGTATTCTCGAATCCATCGGCTTCGACATCATCGGGGTGATGTCCCCCGTCTCCATCTGTATGTTCCTTGTTGTCCTCCTCGTCTATTCCCTCTCTTCCTCCAATCCTGCTCCTGTCGATACCATTCGCACTGCCGCCAACCTCGTCTACGTTGAGAACCCTTCCGACTCTGCTCCCCAGAAGCTCGAAGGCGCCCTTCTCAATGCTTTGGTCTTTGTCATCTTGATCGCCGTCGTCACCTTCCTCCTTGTCCTCCTTTACTATTACAACTTCACCAATTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTTCTTGGCACCATGGGCGGATCCATCTTCTTGTCTGTCATTCAGAAATTCTCCATTCCCGTTGATTCCGTTACTTGTTTTCTTCTGCTTTTCAACTTCACCATTGTCGGCGTTCTCTCCGTATTTTCTGGTGGGATCCCAATTTTGTTGAGGCAAACCTACATGGTCTCTTTGGGGATCATTGTGGCAGCCTGGTTTACAAAATTGCCTGAGTGGACTACCTGGGCTTTGCTCGTCGCTTTGGCTGTTTATGATTTGGTGGCCGTTTTGGCACCTGGTGGCCCGCTTAAGATGTTGGTGGATTTGGCCTCAACCAGGGATGAGGAGCTCCCTGCCTTGGTATACGAGGCTCGGCCAACAGTCGCTCGAACTGGACAACGCGGAGCCTCGTCCTTAGGGCTTTTGGTCGCTGGGGTTTCAGATTCTTCATCTATCGAACTTCAAGCGGTATCAAGGGACAGCGTCAATAGAAATGAGAACGAGGTTCGCAGTAATTCCGATTATTCTGCTGTGACCATGGGGGATTTTCAGAATGAGGACGTTCACAGTAACAGAGATGAAGGGGAGAGGTCGCCATTGGTGGGTAATATACGAGAAAGGCATTCATCAAGCGGTGATTCTTCGCAGTATTCGACGGTTGTCGTTCCATCCAGTCAAGGTGGGCAATTTAACATCAGAGAGGCTGAAATTGTCGATGAAGAAAGGTCTCCCCTTGTTGAAATGATTGGATTGGGGAATGAAGGAAGGCAGACGAGGAGGGGTGATGTGGAGATTGCTGATAGGGGTATTAAACTTGGCCTTGGAGACTTTGTTTTCTACAGTGTCCTTGTGGGTAGAGCTGCAATGTATGATCTTATGACAGTTTATGCTTGTTACCTTGCAATTATATCAGGACTAGGGTGCACTCTTATTTTGTTGTCAGTGTGCCGTCGAGCGCTGCCTGCACTCCCTATTTCTATCACACTGGGTATTATTTTTTATTTCTTGACTCGATTACTAATGGAACCCTTCATTGTTGGAACAGCGACAAATTTAATGATGTTTTGA 1371 0.4792 MDSSILESIGFDIIGVMSPVSICMFLVVLLVYSLSSSNPAPVDTIRTAANLVYVENPSDSAPQKLEGALLNALVFVILIAVVTFLLVLLYYYNFTNFLKNYMRFSAFFVLGTMGGSIFLSVIQKFSIPVDSVTCFLLLFNFTIVGVLSVFSGGIPILLRQTYMVSLGIIVAAWFTKLPEWTTWALLVALAVYDLVAVLAPGGPLKMLVDLASTRDEELPALVYEARPTVARTGQRGASSLGLLVAGVSDSSSIELQAVSRDSVNRNENEVRSNSDYSAVTMGDFQNEDVHSNRDEGERSPLVGNIRERHSSSGDSSQYSTVVVPSSQGGQFNIREAEIVDEERSPLVEMIGLGNEGRQTRRGDVEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGIIFYFLTRLLMEPFIVGTATNLMMF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2246 456 MobiDBLite consensus disorder prediction 305 324 - -
Glsi12g2246 456 Gene3D Presenilin 353 447 IPR042524 -
Glsi12g2246 456 SMART psh_8 66 442 IPR006639 GO:0004190|GO:0016020
Glsi12g2246 456 FunFam Presenilin 353 447 - -
Glsi12g2246 456 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Glsi12g2246 456 PRINTS Presenilin family signature 193 210 IPR001108 GO:0004190|GO:0016020|GO:0016485
Glsi12g2246 456 PRINTS Presenilin family signature 176 183 IPR001108 GO:0004190|GO:0016020|GO:0016485
Glsi12g2246 456 MobiDBLite consensus disorder prediction 259 280 - -
Glsi12g2246 456 Pfam Presenilin 12 446 IPR001108 GO:0004190|GO:0016020|GO:0016485
Glsi12g2246 456 PANTHER PRESENILIN 3 456 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2246 Glsi-ChrGlsi12 36962671 36964041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2246 1 456 Miscellaneous Gene Families AT1G08700 67.660 0.0 579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2246 12 36962671 36964041 Glsi12g2246 12 36962671 36964041 ECH