Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2211 ATGAATGTTGATCAACCTCCGGCGACCACAAAGGTGCAGACGTTACATAACCTAACAACAGGCCCTTTGTCTTCGTCAGTTGGCAACCTGTCCGGTTCTTCCCGATGCATTCCCTACGACAAAGACTTTCACTTCTATAACAACTTCGACGAATTAAAAAATCCAATTCAAGAAATCACGAAGAAATCCCAGTCGATGCTGGAAAATATCGGTACCTCGGCGCATATATGGGGCAAGGACATGGCTTATCCTTTGGACATGGATTATGCGTATGAGTGGTTGGTTAATGTGAATGATGAGGTCTTTGAGCGGTTCGATGTGTCACTGGATGAGTTTCAGAGGATTAGGAAGAAAGAGGAGCAGACTGGGCGTCCAATGAATTCCTTGGCGGACTCGGAAAATGGGTTTCAGTTGGTTTATGGGAAGAAACAGAAGGGGGGAAGTCTTCCGGGGGCAGGGAAAGAGGAGGAGCTAGACTCAAGTCCAGCCTCGGGTGTTAAAGTGGCCACAAAGGACAAGAAAACGACTGGGCCGAAGCCAAAGGTGCCGTTTCATATACCAACGATTAGGAGGCCTCAGGATGAATATAACATATTGGTTAATAATTCAAACCAGCCTTTTGAGCATGTCTGGTTGCAGAGGAGTGATGTTACTCGCAGGTTTATTCATCCTCTGGAGAATCTCTCTGTTTTGGATTTTGTTGATAAAGATCTTGGGGATGTTGAGCCAATAAAGCCTCCCTCAATAGAATGTGCCCCTTTCAATATAGTGAAGGAAGTCAAAGATTTGAAGGAGTTGGCTGCTAAACTGCGTGTTGTTAATGAATTTGCGGTGGATTTAGAGCATAATCAGTATCGGTCTTTTCAAGGGTTGACTTGCTTGATGCAAATCTCAACTAGGACTGAAGATTTTGTGTTAGACACTCTGAAGCTTCGTATACATGTTGGGCCCTATCTAAGGGAAGTTTTCAAGGATCCTGCTAAGAGGAAGGTCATGCACGGAGCAGATCGAGATATTGTGTGGCTTCAACGGGATTTTGGCATTTATATTTGTAATTTATTTGACACTGGCCAGGCCTCAAGGGTATTAAAATTGGAAAGAAATAGTTTAGAATATCTTTTGCATCACTACTGTGGGGTTACTGCAAACAAAGAATACCAGAATGCAGATTGGAGGTTACGCCCGATTCCTGATGAGATGCTTAGATATGCCAGAGAAGATACACACTATCTGCTGTATATGTATGATTTAATGAGACTGAATTTATTTGCAATGTGGAAGGAGCCTCGAAGTTCTAGTACTCCTCTGGTGGAGGTGTACAAGCTCAGTTATGATGTCTGCATGCAGCTATACGAGAAAGAGCTTCTAACAGAGAACTCCTACCTATATATATATGGGTTGCAAGGGGCTGGTTTTAATGCTCAGCAGCTGGCCATTGTTTCAGGACTATGTGAATGGCGGGATATTGTTGCTCGGGCAGAGGATGAGAGTACTGGCTATGTATTGCCAAATAAAACTCTTCTTGAAATTGCTAAGCAGATGCCTGTAACTACAAGCAAGCTATGTCGATTGATAAAATCAAAGCTCCCATATGTTGAGTGCAACTTTGATGCTATTGTCAGCATCATTAGACATTCTATGCAAAATGCCTCTGCCTTTGAAGCAGTTGCACAAAAATTGAAAGAGGGACGTGTCACAGCTGAAGGGGCTGAATGTGCTCTTTATATTAGACATCGAGATGAATATGGACAAGTAAAATTTGAATCTGATAGTCTCACTTCAGAATTCCCTAGCGATCGTTTAACCATTCCACAGCTGAACAGGAATGCAAATATTGGTACCCCCTATACAGCAAAGGGTAATGGAGCAAATTTTTGGGTGCTAAAGAAGCCTAGTGGTGCTTTTGGGGCGCTGCTGGGGAGTTCAGCTTCGAAGAGGAAGCTTGATCCTGATGAAAAGGGCAAGGAAGAGGTCAAGCTAGAGCAGATTATATCTTCAGTCAATCTTTCTTTCTATTCATTGTTGGGTAGCAATGATAAGTCAAGACTAGTTGTAGAAACTCCTAGTGTAGCATGTGAAATATCGAAGCCGCAAAAACCTGTTTACGATCCAGTTTCCACTTCTACTCTGGATGAGATTATAATGCTGAACTCTGATTCAGATCCAAAGAGTATGACATACAACATCCTAGGAAGCCCTATCGAGCTTAGGGAGAAAAGTTGTGAATCCACTTCAGGAAAAGAGAATGAAGATGAGCCAATGTCTCTCTCAGAATTGTCATCAAGCTTTGAAAAATGCTTTCAGTCAAACAATCATATTTCCAGAGTCTTCAAGAAAACTGAAGAATTCAGTGGCTTATTGCAGCTGAAGCCATTTGATTATGAAGCGGCAAGGAAACAGGTTAAGTTTGGAGAAGATGCCGAGGGCGCATCTTCCCAGGGTGATTATGGTCTGCGTGACTTGGATAGCAAGAAGGAAAGTTCAGTGACAGGACGAGGACAAACGAGTGGTTTGACAAAAGAATTACCAGAAGGTAGAAGGCGTCAGGCATTTCCAGCTTCTGGGAATCGAAGTTCAACTTTCAGTTGA 2589 0.4284 MNVDQPPATTKVQTLHNLTTGPLSSSVGNLSGSSRCIPYDKDFHFYNNFDELKNPIQEITKKSQSMLENIGTSAHIWGKDMAYPLDMDYAYEWLVNVNDEVFERFDVSLDEFQRIRKKEEQTGRPMNSLADSENGFQLVYGKKQKGGSLPGAGKEEELDSSPASGVKVATKDKKTTGPKPKVPFHIPTIRRPQDEYNILVNNSNQPFEHVWLQRSDVTRRFIHPLENLSVLDFVDKDLGDVEPIKPPSIECAPFNIVKEVKDLKELAAKLRVVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVLDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLKLERNSLEYLLHHYCGVTANKEYQNADWRLRPIPDEMLRYAREDTHYLLYMYDLMRLNLFAMWKEPRSSSTPLVEVYKLSYDVCMQLYEKELLTENSYLYIYGLQGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKTLLEIAKQMPVTTSKLCRLIKSKLPYVECNFDAIVSIIRHSMQNASAFEAVAQKLKEGRVTAEGAECALYIRHRDEYGQVKFESDSLTSEFPSDRLTIPQLNRNANIGTPYTAKGNGANFWVLKKPSGAFGALLGSSASKRKLDPDEKGKEEVKLEQIISSVNLSFYSLLGSNDKSRLVVETPSVACEISKPQKPVYDPVSTSTLDEIIMLNSDSDPKSMTYNILGSPIELREKSCESTSGKENEDEPMSLSELSSSFEKCFQSNNHISRVFKKTEEFSGLLQLKPFDYEAARKQVKFGEDAEGASSQGDYGLRDLDSKKESSVTGRGQTSGLTKELPEGRRRQAFPASGNRSSTFS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2211 862 ProSiteProfiles HRDC domain profile. 473 553 IPR002121 GO:0003676
Glsi12g2211 862 SMART hrdc7 473 553 IPR002121 GO:0003676
Glsi12g2211 862 MobiDBLite consensus disorder prediction 144 186 - -
Glsi12g2211 862 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 22 861 IPR045092 GO:0000175|GO:0000467
Glsi12g2211 862 FunFam Putative exosome component 10 460 555 - -
Glsi12g2211 862 SUPERFAMILY Ribonuclease H-like 189 424 IPR012337 -
Glsi12g2211 862 SMART 35exoneu6 254 423 IPR002562 GO:0003676|GO:0006139|GO:0008408
Glsi12g2211 862 SUPERFAMILY HRDC-like 455 548 IPR010997 GO:0000166|GO:0044237
Glsi12g2211 862 MobiDBLite consensus disorder prediction 803 862 - -
Glsi12g2211 862 CDD Rrp6p_like_exo 250 441 - -
Glsi12g2211 862 Pfam HRDC domain 476 525 IPR002121 GO:0003676
Glsi12g2211 862 Gene3D HRDC domain 462 554 IPR044876 -
Glsi12g2211 862 Gene3D - 183 461 IPR036397 GO:0003676
Glsi12g2211 862 Pfam 3'-5' exonuclease 256 420 IPR002562 GO:0003676|GO:0006139|GO:0008408
Glsi12g2211 862 Pfam PMC2NT (NUC016) domain 33 113 IPR012588 GO:0000176|GO:0006396
Glsi12g2211 862 FunFam Protein RRP6-like 2 isoform A 188 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2211 Glsi-ChrGlsi12 36749875 36759421 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2211 12 36749875 36759421 Glsi12g2211 12 36749875 36759421 ECH