Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2197 ATGGAAGTAACTGTTTCTCCACTAGCATTGCAGACACCTGGTCGCAAAATTTTATCTGCCAGTTCCCAGAAAGATGTGTGGCTTGTGGTGCGAAAAGGATCTCTGAATGATGTAGAGTTAGGCTTGGCACTATTGAAGAAGAATGGGGTTAATATCAATTCGAGGAACACCTTTGGGCTGACCCTTCTTCATATTGCAACTTGGAGGAACCACATCCCCATTGTCAGGAGGCTTCTTGCAGCTGGTGCAGATCCTAATGCTCGAGATGGAGAATCTGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGTGGCAAGCATCCTTCTACAGCATGGTGCATCTTTTACAATGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCCCTGTATTTCAGGATTTTGGAAATGAATGTAACTCAGTGGCTACTGAGGTCTTTAGTTGGGGAAGTGGCACAAATTATCAGCTTGGAACTGGAAATGCACATATTCAGAAGTTACCATGCAAAGTGGATTCACTTAATGGTTCTTTCGTAAAGTTGATTTCTGCTGCAAAGTTCCACAGTGTGGCTGTTACAGCTTGTGGGGAAGTGTATACCTGGGGATTTGGAAGGGGGGGCCGGCTAGGTCACCCTGATTTTGACATACACAGTGGTCAAGCTGCAGTCATTACTCCCCGTCTGGTGACTTCTCGTCTGGGTGGCTGCCAAGTGAAGGCAGTTGCTGCTGCTAAGCATCATACTGTTATTGCTACAGAAGGTGGGGAAGTGTTCACCTGGGGATCCAATAGAGAGGGACAGCTTGGCTACCCTTCTGTAGATACTCAACCCACACCCCGTAGAGTGACTTCTCAAAGGTCAAAAATTGTCGCTGTTGCTGCAGCAAACAAACACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGTACCTCAAACTCAGCATCTAATTACGCCCCACGTGTAGTTGAATACTTGAAGGGAAAGACTTTAACTAGAGTTTCTGCTGCAAAATATCATACAGTTGTCTTAGGATCTGATGGAGAGGTATATACTTGGGGTCATCGGCTTGTTACTCCAAGACGGGTAGTCATTACTAGGAACTTGAAGAAAAGCAGAAGCACTCTTTTGAAGTTTCATCGTATGGAACGACTTCATGTGGTTTCTATAGCTGCAGGAATGGTACATAGCATGGCTGTAACTGATGATGGTGCATTGTTCTATTGGGTCTCCTCAGATCATGATCTTAAATGCCAACAGCTATATGCTATGTGTGGAAGAAATATGGTGAGCGTATCTGCTGGAAAATACTGGACTGCAGAAGTTACAGCTACCGGTGATGTTTATATGTGGGATGGTAAGAAAGGTAAGGAAAAGCTACCTGTTGCAACTCGATTGCATGGTGTAAAGAGGGCTACATCAGTTTCAGTTGGTGAAACAAATATACTGATTGTGTCTTCCCTCTATCATCCTGTCTATGAGACTTCTCAGCAGCTCAAGTTGAATGACAGGGTTGATATGGAAGATTTAACTGAAGATATATTATTTGAGGATCTGGAATCCGATAATATGATTTCTGTTATACAAAAAAATCACTTTGGGAAGAGGATCATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTGGCAGCAGATTGTCTAGTGGAGCCTCGAAATGCCATTCAATTGCTTGAGATTGCTGATTCTTTAGGAGCAAATGATTTGAAGAAGTATTGTGAGGAGATCGTCATGCGCAACCTTGATTATATCTTTACAGTTTCATCACATGCTGTGGCAAGCGCTTCCCCAGATATTCTGGCTAACCTTGAGATTGAGATGGAGTTTCACGGGACTCGTGACAAACCCATGAAAATGTCTGCATTGAAATTGGAAGAAGACTCTTTTCTACAGCCCAAGGTTGATCCCAATCAAGGAAAAGTAGTTCGAGCTCTAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAGTCTAAGGGATATCCTCTTGATAACCAGCAGATTGCTAAGATTCAATCTAAGTCAGATCTTGAGAGCTCACTTGCGGAGCTAGGCATTCCTGTTGAAACTTCACAGAATAAAGAATCGTCTTCTGTACTGCCAGAAGGGAAAGGGAGTAAAAAGGGTAAACTATCAAGAAAACAGAGGAGAAATAACAGCAAATCAAGTGTGACTGAAATGGAGTCTGTTTATATTGGGACAGAAGTAATATCAGAACCTGCCAAGGACGTGTTGGAAATTGAAATGTTGGAGGGTTCTAACACAAAGGTAGAAGATTCTATGTGCGAACAAACCACAACCGACCAAGGTGCAAAAGATTCAGCTTTTTTGGTTCAGAAGAAAGACGCTATAGAGTTGCTGAAAGATAAGGGTCAATCTTCGAAGGTATCTAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTTTGTTTTTGAGTGGTACTCTCGATGATGCCCCAAAAGAGGTGGCTCCCCCTCCACCGACGCTGAAAAATGAGGGTCCCGCATGGGGTGGGGCCAAGTTTTTTAAGGGATCTGCTTCTCTTCGTGAAATCCAGGTTGAGCAGAGCAAAACAAAGGAAAAGCAGCCAGCTAGCGGCGGTGGTGGGAAAATACGGTTGAATTCATTTGTCCCTTCCAACCCAATACCTGTTGCTACAAGTTGCAGTTCCCAGGCATCTGAGGGAGATAGAAGTACCCCTCCTTGGGCTTCTTCGGGAACCCCACCTAATCTCTCTCGGCCATCTTTAAGGGACATCCAAATGCAGCAGAATCTTTCCCATAGTCCCAAGACTAGAACAGCTGGATTTACTGTTGCTACCGGCCAATGCTCGCCATCCGAAGCTACTGGGATGAACCGCTGGTTCAAGCCCGAGGTGGATACACCCTCCTCAATTCGTTCTATTCAGATCGAAGAAAAGGCAATGAAGGATCTGAAGCGCTTCTACAGCAGCGTTAAGATTGTCAAAAACAACTGTTAA 3051 0.4422 MEVTVSPLALQTPGRKILSASSQKDVWLVVRKGSLNDVELGLALLKKNGVNINSRNTFGLTLLHIATWRNHIPIVRRLLAAGADPNARDGESGWSSLHRALHFGHLAVASILLQHGASFTMEDSKSRIPVDLLSGPVFQDFGNECNSVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLNGSFVKLISAAKFHSVAVTACGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRLVTSRLGGCQVKAVAAAKHHTVIATEGGEVFTWGSNREGQLGYPSVDTQPTPRRVTSQRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYAPRVVEYLKGKTLTRVSAAKYHTVVLGSDGEVYTWGHRLVTPRRVVITRNLKKSRSTLLKFHRMERLHVVSIAAGMVHSMAVTDDGALFYWVSSDHDLKCQQLYAMCGRNMVSVSAGKYWTAEVTATGDVYMWDGKKGKEKLPVATRLHGVKRATSVSVGETNILIVSSLYHPVYETSQQLKLNDRVDMEDLTEDILFEDLESDNMISVIQKNHFGKRIIPSLKSLCEKVAADCLVEPRNAIQLLEIADSLGANDLKKYCEEIVMRNLDYIFTVSSHAVASASPDILANLEIEMEFHGTRDKPMKMSALKLEEDSFLQPKVDPNQGKVVRALRKKLQQIEMLEAKQSKGYPLDNQQIAKIQSKSDLESSLAELGIPVETSQNKESSSVLPEGKGSKKGKLSRKQRRNNSKSSVTEMESVYIGTEVISEPAKDVLEIEMLEGSNTKVEDSMCEQTTTDQGAKDSAFLVQKKDAIELLKDKGQSSKVSKKKSKKGGLSLFLSGTLDDAPKEVAPPPPTLKNEGPAWGGAKFFKGSASLREIQVEQSKTKEKQPASGGGGKIRLNSFVPSNPIPVATSCSSQASEGDRSTPPWASSGTPPNLSRPSLRDIQMQQNLSHSPKTRTAGFTVATGQCSPSEATGMNRWFKPEVDTPSSIRSIQIEEKAMKDLKRFYSSVKIVKNNC 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2197 1016 MobiDBLite consensus disorder prediction 833 982 - -
Glsi12g2197 1016 Pfam Ankyrin repeats (3 copies) 42 123 IPR002110 GO:0005515
Glsi12g2197 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 365 IPR000408 -
Glsi12g2197 1016 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Glsi12g2197 1016 PANTHER BTK-BINDING PROTEIN-RELATED 15 1014 - -
Glsi12g2197 1016 SMART ANK_2a 58 87 IPR002110 GO:0005515
Glsi12g2197 1016 SMART ANK_2a 92 121 IPR002110 GO:0005515
Glsi12g2197 1016 Gene3D - 143 388 IPR009091 -
Glsi12g2197 1016 ProSiteProfiles Ankyrin repeat region circular profile. 92 123 - -
Glsi12g2197 1016 ProSiteProfiles Ankyrin repeat region circular profile. 58 89 - -
Glsi12g2197 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 151 198 IPR000408 -
Glsi12g2197 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 202 256 IPR000408 -
Glsi12g2197 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 261 308 IPR000408 -
Glsi12g2197 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 312 362 IPR000408 -
Glsi12g2197 1016 Gene3D - 18 137 IPR036770 -
Glsi12g2197 1016 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Glsi12g2197 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 421 IPR000408 -
Glsi12g2197 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 260 IPR000408 -
Glsi12g2197 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 311 IPR000408 -
Glsi12g2197 1016 MobiDBLite consensus disorder prediction 903 973 - -
Glsi12g2197 1016 SUPERFAMILY RCC1/BLIP-II 150 469 IPR009091 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 314 328 IPR000408 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 411 429 IPR000408 -
Glsi12g2197 1016 PRINTS Chromosome condensation regulator RCC1 signature 151 167 IPR000408 -
Glsi12g2197 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 150 201 IPR000408 -
Glsi12g2197 1016 MobiDBLite consensus disorder prediction 712 751 - -
Glsi12g2197 1016 SUPERFAMILY Ankyrin repeat 36 132 IPR036770 -
Glsi12g2197 1016 Gene3D - 396 553 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2197 Glsi-ChrGlsi12 36650221 36655835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2197 44 132 Acyl Lipid Metabolism Gene Families AT5G53470 38.462 4.35e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2197 12 36650221 36655835 Glsi12g2197 12 36650221 36655835 ECH