Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2186 ATGTTTAAAGTGCTATTTCACGTTGCTGCAGGAGAGAAGCATGAGGTTCTCCTCTCTGTTCTCTCTCTTCTTTACTTACCTCCTGGTTTATTCGCCATTCGTGTTTTTTTCAGGGTTATATTGCAACAAAGAGAAACAGAGGGAAAGATGAGAGAAATAATAAGTATTCATATTGGGCAAGCTGGAATTCAGGTGGGGAATTCATGCTGGGAGTTGTATTGCCTCGAACATGGAATTCAGCCCGATGGCTTGATGCCCAGCGATACATCATTTGGCGTTGCACATGATGCTTTTAACACTTTCTTCAGTGAGACTGGTTCTGGCAAACATGTGCCAAGGGCTATATTTGTTGATCTGGAACCTACTGTTATTGATGAAGTAAGGTCTGGTTCTTACAGACAACTCTTTCATCCTGAGCAACTAATTTCTGGCAAGGAAGATGCTGCTAATAATTTTGCGAGAGGACATTATACTGTTGGAAGGGAAGTTGTCGACCTATGCCTTGATCGCATCAGAAAATTGGCAGACAATTGCACTGGTTTGCAAGGTTTCTTAGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGATCATTACTTTTGGAACGATTGTCTGTAGATTATGGGAAGAAATCAAAACTTGGCTTTTCCATTTATCCTTCTCCTCAGGTATCTACCGCAGTAGTTGAACCTTACAACAGTGTTCTTTCCACTCATTCTCTTCTTGAGCACACTGATGTGACAGTGCTTTTGGACAATGAAGCCATATATGATATCTGCAGGAGATCATTAGATATAGAAAGGCCAAGTTACACTAACTTGAATCGCTTGATATCTCAAATAATCTCTTCCTTAACCACTTCCTTGAGATTTGATGGTGCAATTAATGTGGATATCACCGAGTTCCAGACTAACCTTGTGCCATATCCACGTATCCATTTTATGCTCTCATCTTATGCTCCTGTAATCTCAGCTGAAAAGGCCTACCATGAGCAGCTATCAGTTCCTGAGATCACCAGCTCTGTCTTCGAGCCATCCAGTATGATGGCTAAGTGTGACCCAAGACATGGAAAATACATGGCATGCTGCCTCATGTATCGTGGAGATGTGGTGCCCAAAGATGTTAATGCTGCTGTCGCTACTATCAAGACAAAGCGAGCAGTTCAGTTTGTTGACTGGTGCCCTACTGGTTTCAAGTGTGGTATCAATTACCAGCCTCCAACAGCGGTACCTGGAGGTGATCTTGCGAAGGTGCAGCGTGCAGTTTGTATGATAAGCAACAACACAGCTGTGGCGGAGGTTTTCTCACGAATTGACCACAAATTTGATCTCATGTATTCCAAGAGGGCATTTGTCCACTGGTATGTCGGTGAAGGAATGGAAGAAGGTGAATTCTCAGAAGCCCGTGAGGATCTTGCTGCTCTTGAAAAAGACTATGAAGAAGTTGGGGCAGAAGGCGTCGATGAGGAAGATGATTACTGA 1488 0.4328 MFKVLFHVAAGEKHEVLLSVLSLLYLPPGLFAIRVFFRVILQQRETEGKMREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSFGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRSGSYRQLFHPEQLISGKEDAANNFARGHYTVGREVVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVTVLLDNEAIYDICRRSLDIERPSYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITSSVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRAVQFVDWCPTGFKCGINYQPPTAVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDEEDDY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2186 495 SMART Tubulin_4 98 295 IPR003008 GO:0005525
Glsi12g2186 495 Coils Coil 467 487 - -
Glsi12g2186 495 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 191 197 IPR017975 GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 Pfam Tubulin/FtsZ family, GTPase domain 52 262 IPR003008 GO:0005525
Glsi12g2186 495 CDD alpha_tubulin 51 484 - -
Glsi12g2186 495 FunFam Tubulin alpha chain 50 317 - -
Glsi12g2186 495 Pfam Tubulin C-terminal domain 312 441 IPR018316 -
Glsi12g2186 495 PRINTS Tubulin signature 227 240 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 202 223 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 429 457 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 157 181 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 241 261 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 59 79 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 102 121 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 144 155 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Tubulin signature 183 201 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 SMART Tubulin_C_4 297 442 IPR018316 -
Glsi12g2186 495 PANTHER TUBULIN 51 487 IPR000217 GO:0005874|GO:0007017
Glsi12g2186 495 SUPERFAMILY Tubulin C-terminal domain-like 295 485 IPR008280 -
Glsi12g2186 495 PRINTS Alpha-tubulin signature 434 450 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 67 82 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 471 487 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 210 221 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 137 150 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 409 428 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 323 338 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 396 409 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 263 275 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 370 391 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 94 107 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 197 209 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 PRINTS Alpha-tubulin signature 169 177 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi12g2186 495 Gene3D Tubulin/FtsZ, GTPase domain 50 317 IPR036525 -
Glsi12g2186 495 SUPERFAMILY Tubulin nucleotide-binding domain-like 50 293 IPR036525 -
Glsi12g2186 495 Gene3D Helix hairpin bin 433 485 IPR023123 -
Glsi12g2186 495 FunFam Tubulin alpha chain 433 495 - -
Glsi12g2186 495 FunFam Tubulin alpha chain 318 432 - -
Glsi12g2186 495 Gene3D - 318 432 IPR037103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2186 Glsi-ChrGlsi12 36552497 36557876 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2186 12 36552497 36557876 Glsi12g2186 12 36552497 36557876 ECH