Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2180 ATGCAAGCGCACCTTCTGGTGGGACCCCTCCCCATCACTGGCTGTGGTGGCAGGTTGCCCGCCATCGTCGATTCCAATCTGTTCATCGCAGCTCCACTGAGCTGGAGAAACCGTCGGCACCGGCGACCCCGCCATGGTCACAGGCGAATCCCGGTTATCGTAGCATCATCCTCGGCAGCGGCAATCAACGGCGAGCAAAACCACTACGTCGTGTTGGGCCTTGATCAAACTGCCACCGCTGCCGATATCAAAAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCTGATGTTAGCAAAGATTCACAAGCTGCTGAATTGTTCAAGAGCATTCGTCGAGCATACGAAGTATTATCCAATGAGGCAACAAGAATTCAGTATGATCAGGCTCTAAAATTTTGCCGGAGGCCTTACAGGGAAAAATGGAGTTACAGCACGGAATTTGAAGATGAGGTAAGAATGTATAGGTGGGCCAAACTGAGGCAGAAAATGCATAATGAAGTATATTGGGAGCATTACAACGTTAATGAGAGCTACTACAGCAGTGAAACAGAGGAGGAGGATGAAGAAGAAAAATTAGATGAAGAGAGGGGCTCCTTTATTGAAGTTCTTAGATCTGCATTCATGTCTTTGATATTGTTGCGGACGTTTGGATCCCGATTATCCCTCACATTTAGCAGTCTAATGGCGTTGTTTGACAGGAAGTTGGATAGTGGCTATAAAATTGGTTATGTGATAGCATGGATTTTGGGAGGTAGGAGTGGCATATTGCTAACATTATGCTTGTCATTTGCGAGTTGGGTTTGTGGGAAAACCAGTAGTAGTGTAGTTGCTCTAGTGGTGGTAGCCATGTGGGTTAGCTCCTATCTAGCCAGGTATGCCCCACTTCCCCAAGGTGCTCTGCTAACTCTTGTTTACATGTCCATTAAGCTACAATCTGACCGTATATAA 951 0.47 MQAHLLVGPLPITGCGGRLPAIVDSNLFIAAPLSWRNRRHRRPRHGHRRIPVIVASSSAAAINGEQNHYVVLGLDQTATAADIKRAYRLLARKYHPDVSKDSQAAELFKSIRRAYEVLSNEATRIQYDQALKFCRRPYREKWSYSTEFEDEVRMYRWAKLRQKMHNEVYWEHYNVNESYYSSETEEEDEEEKLDEERGSFIEVLRSAFMSLILLRTFGSRLSLTFSSLMALFDRKLDSGYKIGYVIAWILGGRSGILLTLCLSFASWVCGKTSSSVVALVVVAMWVSSYLARYAPLPQGALLTLVYMSIKLQSDRI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2180 316 PRINTS DnaJ domain signature 69 87 IPR001623 -
Glsi12g2180 316 PRINTS DnaJ domain signature 87 102 IPR001623 -
Glsi12g2180 316 PRINTS DnaJ domain signature 103 123 IPR001623 -
Glsi12g2180 316 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Glsi12g2180 316 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 142 307 - -
Glsi12g2180 316 Pfam DnaJ domain 67 128 IPR001623 -
Glsi12g2180 316 CDD DnaJ 67 120 IPR001623 -
Glsi12g2180 316 FunFam Uncharacterized protein 64 211 - -
Glsi12g2180 316 SUPERFAMILY Chaperone J-domain 64 134 IPR036869 -
Glsi12g2180 316 SMART dnaj_3 66 123 IPR001623 -
Glsi12g2180 316 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Glsi12g2180 316 Gene3D DnaJ domain 64 208 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2180 Glsi-ChrGlsi12 36522356 36524986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2180 67 132 Miscellaneous Gene Families AT1G16680 44.928 3.18e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2180 12 36522356 36524986 Glsi12g2180 12 36522356 36524986 ECH