Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2167 ATGGCTCAAGGCAGCGGTTCCAACACTACTTACCCGAACCCAGCAACTCAATCTGGGCCGCTTCAAGACCGAGTTGCAATTATCACCGGTGCGTCCCGCGGAATCGGTCGAGAGATTGCACTTCATCTAGGTTCACTTGGCGCCAGAATCGTGGTGAATTACGCCTCCAACTTGGCCCAAGCAGAGTCAGTGGCGGCTCAGATAAATTCCTCCTCCCCCAGTGGCAGTTACCCACGAGCCATAGCTGCTCGGGCTGATGTTTCGGACCCGACTCAGGTGAAGTCTCTCTTCGACGAGGCTGAGAAGGCCTTTAACTCCTCGGTTCATATCTTGGTTAACTCAGCCGGAGTTCTTGACAGCAAATACCCTTCAATAGCCAACACTTCCTTGGAGGATTTTGATTATATTTTTAGTGTGAATGCAAGAGGGGCATTCCTGTCCTGTAGAGAGGCAGCAAACCGTTTGAAACGTGGTGGTGGAGGTCGAATTATAATGTTATCTTCATCACTTGTGGGTGCATTGAAACCAGGTTTTGGGGCATATACAGCATCCAAAGCAGCTACTGAGGCAATGGTGAAGATTTTAGCAAAAGAGCTGAAGGGGACAGGAATTACAGCTAACTGTATTGCGCCAGGGCCAATTGCAACAGAGATGTATTTTGCTGGGAAGACAGACGAGCAAGTGAAGGCGGCAATTGAAGAGTCTCCACTCTGTAGGCTTGGCGAGACCAAGGATGTTGCCCCTGTAGTGGGGTTTTTGGCCACTGATGCCAGTGAGTGGGTCAATGGACAGGTTATTCGTGTTAATGGTGGCTATGTCTAA 822 0.4988 MAQGSGSNTTYPNPATQSGPLQDRVAIITGASRGIGREIALHLGSLGARIVVNYASNLAQAESVAAQINSSSPSGSYPRAIAARADVSDPTQVKSLFDEAEKAFNSSVHILVNSAGVLDSKYPSIANTSLEDFDYIFSVNARGAFLSCREAANRLKRGGGGRIIMLSSSLVGALKPGFGAYTASKAATEAMVKILAKELKGTGITANCIAPGPIATEMYFAGKTDEQVKAAIEESPLCRLGETKDVAPVVGFLATDASEWVNGQVIRVNGGYV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2167 273 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 24 212 - -
Glsi12g2167 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Glsi12g2167 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Glsi12g2167 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Glsi12g2167 273 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 13 271 - -
Glsi12g2167 273 MobiDBLite consensus disorder prediction 1 22 - -
Glsi12g2167 273 Pfam Enoyl-(Acyl carrier protein) reductase 30 272 - -
Glsi12g2167 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 168 196 IPR020904 GO:0016491
Glsi12g2167 273 CDD THN_reductase-like_SDR_c 21 273 - -
Glsi12g2167 273 FunFam Short-chain dehydrogenase reductase 13 273 - -
Glsi12g2167 273 Gene3D - 3 272 - -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 236 256 IPR002347 -
Glsi12g2167 273 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Glsi12g2167 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 272 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2167 Glsi-ChrGlsi12 36464860 36467166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2167 7 271 Acyl Lipid Metabolism Gene Families AT1G24360 31.716 3.65e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2167 12 36464860 36467166 Glsi12g2167 12 36464860 36467166 ECH