Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2124 ATGGGGGCGGAACCTAAGAACGATAAAGAATCGAGATCAAAATGCTGCAGCCCTGTCAAGAAACCGGGACCGGTGACAATGGATCATGTTCTGCTGGCATCTCAGGAGACCAAGGAAGGGAGGGAACTAAGGATCCGCAGTCTTTTCGGTTTCTTTGATACGGCAAATGCTGGGTTTATAGACGATGCCCAGATTGAGGCTGGCCTTTCTGCGCTTCATATACCATCTGAATATAAGTATGCTAAGGATTTGTTGAATGCTTGTGATGCTAATAAAGATGGTCGAGTTGATTATCAAGAGTTTAAAAGGTACATGGACGACAAGGAGATGGAGCTTTACCGTATATTTCAAGCCATTGATGTTGAACATAATGGATGCATTTTGCCAGAAGAGCTCTGGGAGGCACTAGTAAGGGCAGGGATTCAAATTGATGATGAGGAACTCGCCCGTTTTGTCGTGCGTGTTGACAAGGATAATAATGGGGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACTATTGAAAACATTTACCGTTATTTGGAGCGTGTATGCCTTGTTGATATTGGGGAACAAACGGTTATTCCTGCAGGCATCAGTAAGCACATCCATGCTAGTAGATATCTGATTGCAGGAGGCGTAGCAGGAGCAGCATCACGCACAGCAACTGCACCCCTTGATCGTTTAAAGGTTGTTTTGCAAGTCCAAACAACGCGAGCTCATATAATGCCTGCAGTCAACGATATATGGAGAGAAGGTGGTTTGTTGGGGTTTTTTCGAGGCAATGGCTTAAATGTCCTTAAGGTGGCCCCTGAAAGTGCTATTAGATTTTATACTTATGAGATGCTAAAGACTTCCATTGTGAATGCTAAAGGAGAAGAGGCAAATTCTGATGTTGGAACTATTGGGCGCTTTCTAGCTGGTGGTATGGCTGGTGCTATAGCTCAAACTGCAATATATCCAATGGACCTTATTAAAACACGAATACAAACCTATGCCAGTCGAGGTGGACGAACTCCTAGTCTTGGAACCCTCTCGAAAGATATATGGGTTCAGGAAGGTCCCCGTGCATTTTATAGGGGCCTGATTCCTTCTCTTCTTGGGATTATCCCTTGTGCTGGCATAGATCTGGCTGCATATGAAACCTTGAAAGATATGTCCAAGAAGTATATTCTTCATGATGGAGAACCTGGTCCTCTTGTACAATTGGGATGTGGGACGGTATCAGGAGCCCTTGGAGCAACATGTGTTTACCCATTGCAGGTCGTTCGAACGAGAATGCAGGCTCAACGATCCAATACTAGTACTTCTTATAAGGGGATGACTGATGTATTCATGAGAACTTTCCAACATGAAGGGTTTAGGGGATTCTACAAAGGGATATTTCCTAACCTGCTCAAAGTCGTTCCATCGGCAAGTATCACTTATATGCTTTATGAGACCGTGAAAAAGGCAATTTGCGCTTGTGTTTTTCGCCCTCTCCCGCCGCTGAACCAGTGTGTGCGTTTCTCCCTTGCTGCTGCTGCTGGTGGCAAAACTAGGGTTTTCTGCTCCACGAAATCAACTTCCAAGATGGTTCTTCAGAATGATGTTGATCTGCTAAATCCCCCAGCTGAGCTGGAGAAGAAAAAGCACAAACTCAAACGTCTTGTTCAGTCACCAAATTCTTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTCTTCAGCCACTCTCAGACGGTTGTGGTATGTGGCAACTGCCAGACTGTCTTATGCCAACCAACAGGTGGGCGAGCAAGGCTAACAGAGGGTTGCTCTTTTAGGAAGAAGGGTGATTAA 1854 0.4488 MGAEPKNDKESRSKCCSPVKKPGPVTMDHVLLASQETKEGRELRIRSLFGFFDTANAGFIDDAQIEAGLSALHIPSEYKYAKDLLNACDANKDGRVDYQEFKRYMDDKEMELYRIFQAIDVEHNGCILPEELWEALVRAGIQIDDEELARFVVRVDKDNNGVITFEEWRDFLLLYPHEATIENIYRYLERVCLVDIGEQTVIPAGISKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAHIMPAVNDIWREGGLLGFFRGNGLNVLKVAPESAIRFYTYEMLKTSIVNAKGEEANSDVGTIGRFLAGGMAGAIAQTAIYPMDLIKTRIQTYASRGGRTPSLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPCAGIDLAAYETLKDMSKKYILHDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSNTSTSYKGMTDVFMRTFQHEGFRGFYKGIFPNLLKVVPSASITYMLYETVKKAICACVFRPLPPLNQCVRFSLAAAAGGKTRVFCSTKSTSKMVLQNDVDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2124 617 Pfam Ribosomal protein S27 561 615 IPR000592 GO:0003735|GO:0005840|GO:0006412
Glsi12g2124 617 Gene3D - 536 616 IPR023407 -
Glsi12g2124 617 SUPERFAMILY Mitochondrial carrier 209 488 IPR023395 -
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 215 228 IPR002067 GO:0055085
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 366 384 IPR002067 GO:0055085
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 228 242 IPR002067 GO:0055085
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 268 288 IPR002067 GO:0055085
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 321 339 IPR002067 GO:0055085
Glsi12g2124 617 PRINTS Mitochondrial carrier protein signature 413 435 IPR002067 GO:0055085
Glsi12g2124 617 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Glsi12g2124 617 PANTHER SOLUTE CARRIER FAMILY 25 168 493 - -
Glsi12g2124 617 Pfam Mitochondrial carrier protein 405 493 IPR018108 -
Glsi12g2124 617 Pfam Mitochondrial carrier protein 209 296 IPR018108 -
Glsi12g2124 617 Pfam Mitochondrial carrier protein 306 396 IPR018108 -
Glsi12g2124 617 SMART efh_1 44 72 IPR002048 GO:0005509
Glsi12g2124 617 SMART efh_1 147 175 IPR002048 GO:0005509
Glsi12g2124 617 SMART efh_1 111 139 IPR002048 GO:0005509
Glsi12g2124 617 SMART efh_1 80 108 IPR002048 GO:0005509
Glsi12g2124 617 FunFam 40S ribosomal protein S27 532 617 - -
Glsi12g2124 617 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Glsi12g2124 617 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 123 198 - -
Glsi12g2124 617 ProSiteProfiles Solute carrier (Solcar) repeat profile. 306 393 IPR018108 -
Glsi12g2124 617 Pfam EF-hand domain pair 110 169 IPR002048 GO:0005509
Glsi12g2124 617 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 293 IPR018108 -
Glsi12g2124 617 FunFam Mitochondrial substrate carrier family protein 15 110 - -
Glsi12g2124 617 SUPERFAMILY EF-hand 38 210 IPR011992 -
Glsi12g2124 617 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Glsi12g2124 617 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Glsi12g2124 617 FunFam Mitochondrial substrate carrier family protein 206 494 - -
Glsi12g2124 617 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Glsi12g2124 617 Hamap 30S ribosomal protein S27e [rps27e]. 555 615 IPR000592 GO:0003735|GO:0005840|GO:0006412
Glsi12g2124 617 ProSiteProfiles Solute carrier (Solcar) repeat profile. 404 492 IPR018108 -
Glsi12g2124 617 MobiDBLite consensus disorder prediction 1 21 - -
Glsi12g2124 617 ProSitePatterns Ribosomal protein S27e signature. 569 601 IPR000592 GO:0003735|GO:0005840|GO:0006412
Glsi12g2124 617 Pfam EF hand 82 103 IPR002048 GO:0005509
Glsi12g2124 617 Gene3D Mitochondrial carrier domain 206 495 IPR023395 -
Glsi12g2124 617 Gene3D - 28 190 - -
Glsi12g2124 617 MobiDBLite consensus disorder prediction 1 16 - -
Glsi12g2124 617 SUPERFAMILY Zn-binding ribosomal proteins 561 615 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2124 Glsi-ChrGlsi12 36224982 36229532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2124 9 493 EF-hand Containing Proteins AT5G51050 71.605 0.0 735
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2124 12 36224982 36229532 Glsi12g2124 12 36224982 36229532 ECH