Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2029 ATGCGTTGTCTTATGAGCGTTTATTCCTTCCCTTTCGCAGCCTTTCTTCAGGTTCTGCTATCTGAACAATTATTTGCAAACCCTTCTCCTAAAGCTTCTGCTTCTTCCAACACTGCGCACTGGCTCAAAGTAAAAGAAGCAAAGGGCAGAGAAAGAGAAAAGTTGACTAGAAATGACTTCAGCATGAGCACTAAAAAAACATTGCTTGTCCGGAGCACTGGCAGAAGCTTTCAAGTGAGTGCCCATAGTACCCTGGCAAAAAAGATGAGGTTTCCGCAGGATAAGGGCAGTGGTTCCTCAGGTGAAGGACCTCAGGATGCAGATTATAATGTAGCGTCTCTGAGCGACGAGCTGGAGACCCTGATCTTGGCTAGAGTTCCAAGATTCGAGTACTGGAAATTTTCTTGTGTTAACAAGCGGTTTTTAACTCTACTCAAGAGTGGTGAAATCTATAAAATCAGGGGAGAGATAGGGTTCAAAGAACCATCTGTGTTTATGTTAGCAAGTGGAGAGAGCAACTGGTGCGCATTTGATCGGCATTTCCAGTCCCGCAAGAAGCTCCCTATTATTCCATCAGATTATAATTTTGAGTATGGAGATAAGGAGTCATTCTCGGCAGGGACCCATCTGTTTGTTTCAGGAAAGGAGTTTGATGGAGCCGCTGTTTGGAGGTACGAGTTAGCAACAAACGAATGGTTCAAGGGTCCTTCCATGATCAGCCCGAGGTGTCTCTTTGCATCTGCCACCTGTGGTAACTTCGCTTTTGTTGCAGGTGGTCTAGACACCAAAACTTGCAGGGAAGTATTGAACTCTGCTGAGAGGTACAATTCAGAGAGCAAGTCATGGAAATCCCTCCCCAGGATGAAACGAAATAGAAGGTTTTGCTCAGGTTGTTACATGGATAACAAGTTCTACGTAATAGGGGGACAAGATGAGCAACAAAATGATCTCGCTTGTGGGGAATTCTTTGATGAAGAGACAAATACTTGGAACTTGATTCCCGACATGCTAAAAGATATTCCCGTTCCACCTACACGATCTCCACCTCTCGTTGCTGTTGCCAATAACGAGCTGTACACACTGGATGCTTCTTCGAACGAGCTGAAGGTATATCTGAAGGGAAGCAACTCATGGAAGAAGTTAGGACCAGTTCCAGTGATAGCCAATGCTCAAGGTGGCTGGGGTGTGGCATTCAAGTCTCTGGGTAATGAGCTGCTTGTAATTGGTGCAACTTCTGTGTCTTATGCAGGGCGTGGGTTGAGTATATACACTTGCTGCCCGGATCCAGCTGTTGAGGAATTGCAGTGGAGGCAAATTGAATGTGGGACCACCCAGCTTAATCCCTTTATTCACAATTGTGCTGTGATGGTTGCTTGA 1377 0.4553 MRCLMSVYSFPFAAFLQVLLSEQLFANPSPKASASSNTAHWLKVKEAKGREREKLTRNDFSMSTKKTLLVRSTGRSFQVSAHSTLAKKMRFPQDKGSGSSGEGPQDADYNVASLSDELETLILARVPRFEYWKFSCVNKRFLTLLKSGEIYKIRGEIGFKEPSVFMLASGESNWCAFDRHFQSRKKLPIIPSDYNFEYGDKESFSAGTHLFVSGKEFDGAAVWRYELATNEWFKGPSMISPRCLFASATCGNFAFVAGGLDTKTCREVLNSAERYNSESKSWKSLPRMKRNRRFCSGCYMDNKFYVIGGQDEQQNDLACGEFFDEETNTWNLIPDMLKDIPVPPTRSPPLVAVANNELYTLDASSNELKVYLKGSNSWKKLGPVPVIANAQGGWGVAFKSLGNELLVIGATSVSYAGRGLSIYTCCPDPAVEELQWRQIECGTTQLNPFIHNCAVMVA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2029 458 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 107 456 - -
Glsi12g2029 458 Pfam Kelch motif 292 336 IPR006652 GO:0005515
Glsi12g2029 458 Pfam Kelch motif 241 288 IPR006652 GO:0005515
Glsi12g2029 458 FunFam F-box/kelch-repeat protein SKIP11 156 441 - -
Glsi12g2029 458 Gene3D - 158 441 IPR015915 GO:0005515
Glsi12g2029 458 SMART kelc_smart 303 356 IPR006652 GO:0005515
Glsi12g2029 458 SMART kelc_smart 209 252 IPR006652 GO:0005515
Glsi12g2029 458 SMART kelc_smart 255 302 IPR006652 GO:0005515
Glsi12g2029 458 SUPERFAMILY Kelch motif 171 433 IPR015915 GO:0005515
Glsi12g2029 458 SUPERFAMILY F-box domain 112 184 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2029 Glsi-ChrGlsi12 35688241 35690077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2029 114 333 Miscellaneous Gene Families AT4G33900 26.667 1.08e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2029 12 35688241 35690077 Glsi12g2029 12 35688241 35690077 ECH