Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1512 ATGCCTTACTCCGCCATTTTTCAGGGCTATATCAGAACCACTACTTCTACTTCAACCCCTTTTTTCACCATGTCACTCAGGGGTCCCCTTTACCTCTCATCCCACATAACCCATAAAGCTCAAAGGCTTTCACTTTTCTCCCTTTCCGTGCGACGTCAAGCTATTGGGCGAAGGTGTTTTTATGTACCCCCAAATATAGCGTCTCGGCTAGGGGTTGCGAGTTCAGTAGCGCCTTCTAGGACGACTGAGGTGGATTGCAAAGAGAGACAAGTTGTAGGCTTTAGACGGAGGAGCATTCCTTTGCCGTTTTGGCATCAGCAGAGCTCCAATTATGGTCGTTTTGCTTACCAGGACGTGTCTAGTGATGATTCCGATGGGGAATTGGTGTCTTCTCAGCAACAATTGGGTGGTTCATCTCTTGATAACATTGATGAGTGGAGATGGAAGTTGACCATGCTTCTTCGCAACAAAGATGAGCAGGAAGTGATGTCAAGGGAGAAAAAGGACAGACATGATTTTGCGCATCTTTCAGCTTTAGCAAATAGGATGGGTTTATATAGCCGACAATATGCAAAAGTAGTTGTTTTTAGCAAAGAACCTCTGCCAAATTACAGATCTGATCTGGATGAAAAGCGTCCACAGAGAGAGGTTATCTTACCTTTTGGTGTTCATAAAGAAGTAGATTCTCATCTCATCACTCATCTTTCTAAAAAGTCTACAAGCTTGGGAGCTTTCTTGGATAAATCCTTGCATAGATCAAGTGGTGTTAGCATTCCTGCTGATGAAGGAATTTATGAGCAGCCAGAGCCCCTGGCACAGAATAAGAATAGTATTGTTGTGGAGAAAATCCTTCAACGAAAAAGTTTGCAACTGCGTAATCAACAACAAGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGCAGAAGTCTTCCTACATTCAAAGCGAAGGATGCATTATTGAAAACCATTTCAGAGAATCAGGTCACTGTTGTCTCAGGTGAAACTGGTTGCGGTAAGACCACACAACTTCCTCAATATATTTTAGAGTCTGAGATTGAAGCTGCACGTGGAGCTGTCTGTAGCATCATTTGTACTCAGCCGAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGTTACAAAGTTCGGCTAGAGGGTATCAAAGGAAGGGACACTCGTCTTCTTTTTTGCACTACAGGTGTATTGTTGCGGAGACTACTAGTGGATAGAAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTTGTTGTCCTGAAGGATCTTCTTCCACGTCGTCCAGAGCTGAGGTTAATTTTGATGAGTGCAACCTTAAATGCGGAGCTTTTTTCTTCCTACTTTGGTGGTGCTCCAACTATGCATATTCCTGGTTTTACGTATCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAATGACTGGATATCGCTTGAATCCTTATAATCAAATTGATGACTACGGTCAAGAAAAGTCATGGAAAATGCAGAAACAAGCTCAAGCTTTAAGAAAAAGAAAGACCCACATTGCTTCTGCTGTCGAGGATGCATTGGAAGCTGCGGATTTCAAGGGGTATAACTTACGCACCCGGGAGTCATTATCCTGCTGGAATCCTGACTCAATTGGTTTTAACCTTATAGAACACATGCTTTGCCACATTGTCAAGAAAGAAAGGCCAGGTGCTGTTTTGGTTTTCATGACTGGTTGGGATGACATAAACTCTTTAAAGGATCAGCTCCAAGCTCATCCTCTGTTGGGCGATCCCAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCCGAGCAGCGGTTAATATTCGAAAATCCTGAAGGAGGAGTGAGAAAAATAGTTCTTGCCACTAATATGGCGGAGACTAGTATAACCATCAGTGATGTTGTCTTTGTGATTGATTGTGGAAAAGCAAAAGAGACATCATATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCAAAGGCTGCTGCTCGACAGAGAAGAGGAAGGGCAGGACGTGTCCAACCTGGTGAATGTTACCATCTTTATCCTAGATGTGTTTATGATGCTTTTTCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCTTATGTCTGCAAATCAAAAGTCTAAAACTTGGAAGCATTTCAGAATTCTTATCCAGAGCTCTGCAGCCACCAGAACCTTTATCGGTTCAGAATGCTGTTGAATATTTGAAAATTATTGGGGCCTTAGATGAGGATGAAAATCTTACAATTCTAGGGCGTAACTTGTCAATGCTTCCTGTAGAGCCCAAACTAGGCAAGATTCTTATTTTCGGAGCCATCTTCAACTGTTTAGATCCCATAATGACCGTTACTGCTGGTCTGAGTGTAAGAGATCCATTCATGATGCCGTTTGATAAGAAGGATCTTGCAGAGTCTGCCAAGGCTCAGTTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTTCGGGCTTATCAGGGTTGGAAAGATGCAGAAGCACAGCAAGCTGGTTATGAGTACTGTTGGCGAAATTTCCTCTCTGCTCAAACACTTAGGGCTATTGACTCTCTTCGAAAGCAGTTTTTTTACTTGCTCAAAGATATTGGTTTGGTTGATCAAAATGCTGACAACTGCAATGCTTGGAGTCATGATGAGAATCTGGTTCGAGCAGTCATCTGTGCGGGTTTGTTTCCTGGAATATGCTCTGTTGTGAACAAAGAAAAGTCAATAGCACTGAAAACCATGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCTGTAAATGCTGGTGTACCCAGAATTCCATACCCGTGGCTAGTATTTAATGACAAGGTGAAAGTGAATTCAGTATTCCTCCGGGATTCAACTGGTATATCTGATTCAGTGCTGCTATTATTTGGTGGGAACGTGTCCAGAGGTGGACTAGATGGTCACCTGAAAATGCTGGGAGGGTACTTGGAATTTTTCATGAAACCTACATTAGCCAAGACTTACTTAAGCTTAAAGGAGGAGCTGGAGGAATTAATTCATAAAAAACTTCTGGATCCCAAGTTGGATATACAATCACATAAGGAGCTTATTTCAGCCGTAAGGTTGTTGGTATCAGAGGACCAGTGTGATGGCAGATTTGTCGTTGGTCGCCAGGTGCCATCACCATCACCATCCAAGAAGGCAAAAGACTCCAAAAGTGATGCTGTTGTTGGGGTTGATAATTCTAAAAACCAGCTGCAAACATTGCTTGCCAGGGCTGGACATGAAGCACCAACCTACAAAACAAAACAACTAAAAAACAACCAATTCCGTTCCACTGTCATATTCAATGGCTTGAATTTTGTTGGTCAGCCTTGCAACAGCAAGAAACTAGCAGAAAAGGACGCTGCTGCTGAGGCTCTTCTATGGTTAAAGGGGGATACACATTCATCTCGTGATGACATTGACCATGTGTCTCTGCTTCTGAAAAAGAGCAAGAAGAAAACTAGGAAAACCTCATTTAGTGGTGCTAAATGGAGTTAA 3648 0.4252 MPYSAIFQGYIRTTTSTSTPFFTMSLRGPLYLSSHITHKAQRLSLFSLSVRRQAIGRRCFYVPPNIASRLGVASSVAPSRTTEVDCKERQVVGFRRRSIPLPFWHQQSSNYGRFAYQDVSSDDSDGELVSSQQQLGGSSLDNIDEWRWKLTMLLRNKDEQEVMSREKKDRHDFAHLSALANRMGLYSRQYAKVVVFSKEPLPNYRSDLDEKRPQREVILPFGVHKEVDSHLITHLSKKSTSLGAFLDKSLHRSSGVSIPADEGIYEQPEPLAQNKNSIVVEKILQRKSLQLRNQQQDWQESPEGQKMLEFRRSLPTFKAKDALLKTISENQVTVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLVVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLEDILEMTGYRLNPYNQIDDYGQEKSWKMQKQAQALRKRKTHIASAVEDALEAADFKGYNLRTRESLSCWNPDSIGFNLIEHMLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITISDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFSDYQLPELLRTPLQSLCLQIKSLKLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEDENLTILGRNLSMLPVEPKLGKILIFGAIFNCLDPIMTVTAGLSVRDPFMMPFDKKDLAESAKAQFAARDYSDHLALVRAYQGWKDAEAQQAGYEYCWRNFLSAQTLRAIDSLRKQFFYLLKDIGLVDQNADNCNAWSHDENLVRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLYANSVNAGVPRIPYPWLVFNDKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPTLAKTYLSLKEELEELIHKKLLDPKLDIQSHKELISAVRLLVSEDQCDGRFVVGRQVPSPSPSKKAKDSKSDAVVGVDNSKNQLQTLLARAGHEAPTYKTKQLKNNQFRSTVIFNGLNFVGQPCNSKKLAEKDAAAEALLWLKGDTHSSRDDIDHVSLLLKKSKKKTRKTSFSGAKWS 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1512 1215 SMART ultradead3 312 505 IPR014001 -
Glsi12g1512 1215 Pfam Helicase conserved C-terminal domain 583 713 IPR001650 -
Glsi12g1512 1215 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 933 1015 IPR011709 -
Glsi12g1512 1215 Gene3D - 575 732 IPR027417 -
Glsi12g1512 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 754 IPR001650 -
Glsi12g1512 1215 CDD DEXHc_RHA-like 330 490 - -
Glsi12g1512 1215 FunFam DExH-box ATP-dependent RNA helicase DExH3 268 492 - -
Glsi12g1512 1215 SUPERFAMILY dsRNA-binding domain-like 1116 1190 - -
Glsi12g1512 1215 Pfam Helicase associated domain (HA2) 777 863 IPR007502 GO:0004386
Glsi12g1512 1215 SMART DRBM_3 1117 1180 IPR014720 -
Glsi12g1512 1215 SMART helicmild6 608 714 IPR001650 -
Glsi12g1512 1215 PANTHER ATP-DEPENDENT RNA HELICASE 253 1060 - -
Glsi12g1512 1215 MobiDBLite consensus disorder prediction 1091 1110 - -
Glsi12g1512 1215 Gene3D - 1100 1184 - -
Glsi12g1512 1215 FunFam DExH-box ATP-dependent RNA helicase DExH3 576 732 - -
Glsi12g1512 1215 Pfam Double-stranded RNA binding motif 1117 1179 IPR014720 -
Glsi12g1512 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 491 IPR014001 -
Glsi12g1512 1215 FunFam Putative ATP-dependent RNA helicase DHX36 756 861 - -
Glsi12g1512 1215 Pfam DEAD/DEAH box helicase 322 475 IPR011545 GO:0003676|GO:0005524
Glsi12g1512 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 909 IPR027417 -
Glsi12g1512 1215 CDD SF2_C_RHA 571 722 - -
Glsi12g1512 1215 Gene3D - 266 492 IPR027417 -
Glsi12g1512 1215 SMART ha2_5 776 867 IPR007502 GO:0004386
Glsi12g1512 1215 CDD DSRM_SF 1122 1176 - -
Glsi12g1512 1215 Gene3D - 756 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1512 Glsi-ChrGlsi12 32133633 32145685 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1512 12 32133633 32145685 Glsi12g1512 12 32133633 32145685 ECH