Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1336 ATGCCAGTCTCCAATAGCCATAAATATAACCTCTCTTGCACAAACTGCAGAGCAGCTTGCTTCTTACGTTCGCAATCTCAAGCCATGTTCAGCATTCTGAAAATCCCATCCCTAATACTTTTCCTCTTGCTGTCTTTAGCTGTTCCTCTTGGTTCATCTGCTGTATTCACAGACTTCACTTCCTGCTTGACTTACCACAACATCAACAACTTCACCAAATTGCCGGACACAAACCATGATCAATCCTCTTCTGATAATTACTTCAAAATCCTCAACTTTTCCATTCAGAATCTTCGGTTTGCAGAACCCATGATCCCCAAGCCAATGGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTTCAGAACAGTGTTGTGTGCTGCACAGAAGCCTCCATAAAAATCAGAGTAAGATGTGGTGGACATAGCTATGAAGGGACTTCCTCTGTAGCCAGTGATGGAAATCCCTTTGTCGTTATAGACTTGATGAACTTAAACCATGTTTGGGTGGACATGGAGACAGAGATGGCCTGGATTGAAGGTGGTGCTACTCTGGGAGAGACTTACTATGCAATCTCTGAAGCTAGCAATGTTCATGGGTTCTCAGCTGGGTCATGCCCCACCGTGGGAGTTGGTGGGCATATTGGTGGTGGTGGATTTGGGCTTTTGTCAAGAAAATATGGGCTTGCAGCTGATAATGTGGTGGATGCACTTCTTGTGGATGCCAATGGAGATTTGTTGAACCGAAAAACCATGGGAGAAGATGTGTTTTGGGCTATTAGAGGTGGTGGGGGTGGTCTTTGGGGGATTGTATATGCCTGGAAAGTCCAGTTGTTGAAAGTGCCACAGATTGTAACTAGCTTCGGAGTCTCTAGAACAGGCACAAAAAGCCATATAGCAAAGCTAGTGAACAAATGGCAACATGTAGCACCAAACTTGGAAGATGACTATTATCTGTCATGCTTTGTTGGTGCTGGTTTGCCTGAAGCTAAAACTGTAGGTTTATCAACAACATTTAAAGGGTTTTATCTGGGTCCTATGGTCAAGGCCATATCTATCCTAAACCAGGTTTTCCCTGAAGTGGGTATTGCGGAAGAAGACTGCACAGAAATGAGTTGGATTGAGTCAATAATTTTCTTCTCTGGCCTAAGCAATGGAGCCACAATATCTGACTTGAAGAACAGGTATCTTCAAGATAAAGAATATTTCAAGGCCAAAGCAGATTTTGTAAGGGTCCCTATTCCTCTTGTGGGCATAGAAACTGCACTTGACATCCTTGAGAAGGAGCCTAAAGGGTTTGTCATTTTGGACCCTTATGGTGGGATGATGCGTAATATAAGCAGTGGATCCATAGCCTTTCCTCACAGAAAAGGAAACCTGTTCGCAATTCAATATCTGATCTATTGGAAAGAAAGAGATAATAACAAAGGCAATGAGTATATTGAGTGGATAAGAGAGTTTTATGCTTCAATGACTCCTTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTAATGGAAGCCACTGACATTAATCGTGCTGAGGATCAAGCCAGGACTTGGGGTGAAAGATACTTTTTGAGTAACTATGATAGACTGGTTAGGGCTAAGACTCTGATTGATCCTAACAATGTTTTCACTAATCAACAAGGCATTCCTCCCATGTCTTCTTCCATCAGTTCAAGGCCAAAAGGGCGTTTGCAGTCAGCAATACGAGCAGAGAGTATGACTACCGAGAAATTGGGAATCAAGATTGAGAGGAACCCTCCTGAGGCGAAACTCACCCAACTTGGTGTTAGGCAATGGCCCAAATGGGGTAGCCCTCCAAAAAAATTCCCATGGACATATGAATCCAAAGAGACTTGCTATCTGTTGGAAGGAAAAGTGAAGGTTACACCCAGCGGGTCAAACGAGTCAGTTGAAATTGCTGCTGGTGACTTGGTTGTGTTTCCAAAAGGGATGAGTTGCACTTGGGATGTGTCCGTTGCTGTGGACAAGCATTACATCTTTGAATAA 2037 0.435 MPVSNSHKYNLSCTNCRAACFLRSQSQAMFSILKIPSLILFLLLSLAVPLGSSAVFTDFTSCLTYHNINNFTKLPDTNHDQSSSDNYFKILNFSIQNLRFAEPMIPKPMAIVLPESLEQLQNSVVCCTEASIKIRVRCGGHSYEGTSSVASDGNPFVVIDLMNLNHVWVDMETEMAWIEGGATLGETYYAISEASNVHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDANGDLLNRKTMGEDVFWAIRGGGGGLWGIVYAWKVQLLKVPQIVTSFGVSRTGTKSHIAKLVNKWQHVAPNLEDDYYLSCFVGAGLPEAKTVGLSTTFKGFYLGPMVKAISILNQVFPEVGIAEEDCTEMSWIESIIFFSGLSNGATISDLKNRYLQDKEYFKAKADFVRVPIPLVGIETALDILEKEPKGFVILDPYGGMMRNISSGSIAFPHRKGNLFAIQYLIYWKERDNNKGNEYIEWIREFYASMTPFVSWGPRAAYINYMDFDLGVMEATDINRAEDQARTWGERYFLSNYDRLVRAKTLIDPNNVFTNQQGIPPMSSSISSRPKGRLQSAIRAESMTTEKLGIKIERNPPEAKLTQLGVRQWPKWGSPPKKFPWTYESKETCYLLEGKVKVTPSGSNESVEIAAGDLVVFPKGMSCTWDVSVAVDKHYIFE 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1336 678 CDD cupin_TM1112-like 609 677 - -
Glsi12g1336 678 Gene3D - 283 497 - -
Glsi12g1336 678 Gene3D - 58 164 IPR016167 -
Glsi12g1336 678 Pfam EutQ-like cupin domain 602 675 IPR008579 -
Glsi12g1336 678 Gene3D Jelly Rolls 579 677 IPR014710 -
Glsi12g1336 678 Pfam Berberine and berberine like 501 560 IPR012951 GO:0016491|GO:0050660
Glsi12g1336 678 SUPERFAMILY RmlC-like cupins 598 676 IPR011051 -
Glsi12g1336 678 ProSiteProfiles PCMH-type FAD-binding domain profile. 104 280 IPR016166 GO:0071949
Glsi12g1336 678 Gene3D - 169 561 IPR016169 -
Glsi12g1336 678 Pfam FAD binding domain 108 246 IPR006094 GO:0050660
Glsi12g1336 678 PANTHER OS08G0158400 PROTEIN 55 562 - -
Glsi12g1336 678 SUPERFAMILY FAD-binding/transporter-associated domain-like 99 281 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1336 Glsi-ChrGlsi12 30759327 30764254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1336 53 560 Miscellaneous Gene Families AT1G30760 42.023 1.15e-130 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1336 12 30759327 30764254 Glsi12g1336 12 30759327 30764254 ECH