Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3044 ATGGGGGTTCAATTCAGAGCCATGCCTGCTGTTACATTGTTGCTGTGTTTTAGTCTTGATTGTTGCATATCAAGAGCTAGGGGTATAAAGGTCCTTCAACCTGCTGTGCATCACTCTAGTGATGTCCTTTTGCTTTTCTCTACTGGCTATTGCATAGACGGATTAAAGCATTTATGTGCTGCTTTGATCACTTGTTGTGATGCCGATTTGTCTAAGCAACCTATAGGTTTAGAAAATCCAGAAGCTCTTGCAAGGGAGACTGTGTTTAGTGTGAGTGAGATTGAAGCACTGTATGAGCTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGATGGGCTAATTAATAAAGAGGAATTTCAGTTGGCGTTATTCAAGACAAGCAAGAAAGAGAGCTTATTTGCAGATAGGGTATTTGATTTGTTTGACACAAAGCATAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCCCTCTCTGTCTTTCATCCCAGTGCACCAGTTGATGATAAGATTGAGTTTTCATTTCAATTGTATGATCTCAAACAGCAAGGCTTTATTGAAAGACAGGAGGTAAAACAAATGGTTGTGGCCACTCTTGCTGAATCTGGGATGAATCTTTCAGATGACGTGATTGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAATCTTGTCTTGCGGCATCCATCCCTTTTGAAGAATATGACTCTTCAATATCTCAAAGACATCACCACCACATTTCCCAGTTTTGTGTTTCACTCACAGGTTGATGATACTTGA 822 0.399 MGVQFRAMPAVTLLLCFSLDCCISRARGIKVLQPAVHHSSDVLLLFSTGYCIDGLKHLCAALITCCDADLSKQPIGLENPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTSKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPSAPVDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3044 273 Gene3D - 79 273 - -
Glsi11g3044 273 ProSiteProfiles EF-hand calcium-binding domain profile. 210 245 IPR002048 GO:0005509
Glsi11g3044 273 SUPERFAMILY EF-hand 80 265 IPR011992 -
Glsi11g3044 273 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Glsi11g3044 273 PANTHER CALCINEURIN B 65 272 IPR045198 GO:0005509|GO:0019722|GO:0019900
Glsi11g3044 273 Pfam EF-hand domain pair 169 237 IPR002048 GO:0005509
Glsi11g3044 273 PRINTS Recoverin family signature 230 250 - -
Glsi11g3044 273 PRINTS Recoverin family signature 75 89 - -
Glsi11g3044 273 PRINTS Recoverin family signature 184 202 - -
Glsi11g3044 273 PRINTS Recoverin family signature 137 158 - -
Glsi11g3044 273 FunFam calcineurin B-like protein 3 79 272 - -
Glsi11g3044 273 Pfam EF-hand domain pair 111 156 IPR002048 GO:0005509
Glsi11g3044 273 SMART efh_1 214 242 IPR002048 GO:0005509
Glsi11g3044 273 SMART efh_1 133 161 IPR002048 GO:0005509
Glsi11g3044 273 SMART efh_1 170 198 IPR002048 GO:0005509
Glsi11g3044 273 ProSiteProfiles EF-hand calcium-binding domain profile. 166 201 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3044 Glsi-ChrGlsi11 26088668 26096810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3044 51 273 EF-hand Containing Proteins AT5G55990 88.341 4.25e-145 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3044 11 26088668 26096810 Glsi11g3044 11 26088668 26096810 ECH