Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2555 ATGACTTCTGCATATTGTCCATCTCTATTGGTGATATACTTTGGTCTTACTAAGCTTGGAAATAGGGTACCCTCTTCAGTTGAGCTAGGAGTTTCAGACCAGAGCATAAAGATGGAGCTGAATAGCATTAAAGATGCATTTGACCGTGTATCTAAGAAGCAAAAGTTATCTTCTTCCAAGTCTCAAGAAGTCATTGATCAGGTGGGGCTCGAAATTGAGCAAGTGTTGGCCAAATTCCAGTCGGCTCATGACTCCTCGTCCCCTGTTGATCAGAAATCCATTCTTACAGAACTCAAATTTAAGCTTAATGCTATGGGGGCACTTCAACAGTTAGAAGGAGCACAGAAGGAACTGAACATAAGTCTCACCAAGTACCAAAAACTCCTGGAAAAATCCTTAAATACTGATGTATCCAAGGCATATAGAAACGTTGACTTTGACTTTCACATTGTGAATCAGATTATTGCAAGCCATTTTTATCGTCAAGGTTTATTTGATCTTGGAGATAGCATCATAAATGAGGCTGGGGAGCCTAATGCAACTGCACTAAGATCTCAATTCTTGGAAATGCATCAGATTCTTGAAGCTATGAGGGTTAGGAACCTACAGCCTGCTCTCACATGGGTCTCTGCCATTCGAGAGAAACTTCTCCAGAATGGTTCTAGTATTGAGCTTAAGCTTCACACACTGCAGTTTGTAGAGGTTTTACAAAATGGAACTAGAGCCGAAGCTTTAAAATATGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCCGCAAGGATGAGTTCCAAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGGCTTGAGAGTTCCCCTTATTCTGAGTTGATGTCTCCAATCCATTGGGAGATGACGACTGAAGAGCTGACTCGGCAGTTCTGTGCTCTCTTGGGGCAGTCCTATGAGAGCCCTTTGAGCGTGGCAGTTGCCGCCGGAGTTGAAGGGTTGCCTACACTCTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAAGAGTGGCAGGCAATGAAACATTTGCCAGTGCCTGTAGAATTGGGGAAGGAATTTCAGTTTCATTCTATTTTTGTCTGTCCTGTGAGTAGGGATCAAGGGAGTGAAGAGAATCCTCCAATGCTGCTGCCATGTTTACACGTTCTTTGCAAGCAATCAATCATGAAGTTGTCAAAAAGCAGCACCCGAAGTTTCAAGTGTCCTTACTGTCCAGCAGACGCTACAGTTGCACTGTGCAGACAGCTGTATTTCTGA 1269 0.4366 MTSAYCPSLLVIYFGLTKLGNRVPSSVELGVSDQSIKMELNSIKDAFDRVSKKQKLSSSKSQEVIDQVGLEIEQVLAKFQSAHDSSSPVDQKSILTELKFKLNAMGALQQLEGAQKELNISLTKYQKLLEKSLNTDVSKAYRNVDFDFHIVNQIIASHFYRQGLFDLGDSIINEAGEPNATALRSQFLEMHQILEAMRVRNLQPALTWVSAIREKLLQNGSSIELKLHTLQFVEVLQNGTRAEALKYARTYLAPFASLRKDEFQKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELTRQFCALLGQSYESPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQAMKHLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKSSTRSFKCPYCPADATVALCRQLYF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2555 422 SMART ctlh 186 243 IPR006595 -
Glsi11g2555 422 SUPERFAMILY RING/U-box 359 414 - -
Glsi11g2555 422 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 186 243 IPR006595 -
Glsi11g2555 422 FunFam Regulator of gluconeogenesis Rmd5 357 421 - -
Glsi11g2555 422 Pfam RING-type zinc-finger 365 406 IPR027370 -
Glsi11g2555 422 Coils Coil 108 131 - -
Glsi11g2555 422 ProSiteProfiles Gid-type RING finger profile. 365 408 IPR044063 GO:0061630
Glsi11g2555 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 421 IPR013083 -
Glsi11g2555 422 SMART toby_final6 239 333 IPR013144 -
Glsi11g2555 422 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 33 421 IPR045098 GO:0004842|GO:0043161
Glsi11g2555 422 SMART ring_2 365 408 IPR001841 -
Glsi11g2555 422 CDD dRING_Rmd5p-like 363 410 IPR037683 -
Glsi11g2555 422 Pfam CTLH/CRA C-terminal to LisH motif domain 186 327 IPR024964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2555 Glsi-ChrGlsi11 18144711 18146505 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2555 11 18144711 18146505 Glsi11g2555 11 18144711 18146505 ECH