Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2378 ATGGACATAACTGATTCGGACTGGGAGACTTTTAGTGAGAGTAGCAGCACCGAGGATCAAGAGGAAAATGATTTTCTATATGGTGGGCAAGCTCGGAGCATACTATCAAGTTTAGAGGAAAGCATTTGGAAAATTGATGATTTTCTCTCATTTGAAAGAGCATTTGTTCATGGAGATGTGGTCTGCTTCTTGTCCGATCCATCTGGACAGATGGGCAGAGTTACAAATGTTGATGTTTTTGTGGATTTGGAGAATATTCAAGGAAAAGTATTTAAAAATGTAAGCTCCAAGAGACTTTTGAAGATTCGCTCCATTTCAGAGGGTGATTTTGTGATTAAGGGGCCATGGCTTGGACGAGTTCAAAGGGTGGTGGACAAAGTAACTGTATTGCTTGATGATGGAGCTAAATGTGAGGTCATTGCCTTGGAAAGAGAGAACCTTTTACCTCTAACACGTAATCTACTTGAAGATTCACAGTATCCATATTATCCAGGGCTGAGAGTAAGGGTTAAATCCTCAACTTCTTCTAAATCGGCTAGATGGTTATGTGGAACTTGGAGAGACAATCAAGATAAAGGAACTGTTTGTGCTGTTGAAGCAGGTTTGGTGTATGTTAACTGGCTTGCATTTGTTCCCATGGGTCCCAGTTTTAATGTGAATGCTCCCACACGCTGGCAAGATTCCAAAAACTTGACCTTGCTGTCATGTTTTTCACATGCAACCTGGCAGCTTGGTGACTGGTGCATGCTTGCACTGGCAGACCAAATGGAACAGAATTTCCAAAATGCATCCACTGGGGATTTGAATGATGAACACATTATGGCAAGAGGATGTAAAAATAGAAACCTTAACTCCAATATCAGGGAACTCTTTGTAATTGGGAAGATAAGGACCAAAGTTGATATTGTGTGGCAGGATGGTGGACATTCTTCAGGAGTAGATCCACATACTTTACTCCCAGTGAATGTCATAAACACACATGAATTTTGGCCTCAGCAGTTTGTCCTGGAAAAAGGTGCTTCTGATGATCTTCCTAAGCCCAGCAGTCAAAGATGGGGTGTTGTCCAATGTGTGGATGCAAAAGAGCGTACTGTGAAAGTACAATGGAATACTGTTTTCATATCCGAGCCAGGGACTTTGGCTGGAGATAGGATGGAGGAAACTGTAAGTGCATACGAACTTGTGGAGCACCCAGACTACTCCTACTGTTTTGGTGATATTGTGTTCAAGGCGGCTCAAAAACAGCTTGGTTACCAAGCTGATAAAAATCAAGCAAAGTCAGCAACTGACTTGAATGTGGAGGCTGCTCCGATAGATAGGAACCATATCAGTTATCAGAATGAGTTTCCTGATAACTGTTTCCTATCCCGTATTGGCAATGTTACTGGTTTCAAAGATGGTGCTGTAGAGGTGAAATGGGCTACTGGTTTAACGACCAAGGTTGCTCCTTATGAAATTTTCCAAATTGATAAACATGAAGGTTCAACTGAAACCCCTGTTCCTTCTGAAGCAGATGTTGGGGAGTTGACTCAAGAGACGATTGAACATGGAAATCTAACTTCTGACGAGAAGGGAAAGGGCTTGTTAGATTTTGATAGTGATAGAGAGAATTGCGAGAAGCATTCAGGGGAACCTAGTTCCTTTTCCCTTCCTCAAGCTGCCATTGAACTTTTCTCCAGCATTAAGGCCAGCATATTTCAAACATTAGGTGTAACATCACTTTCAGTAGCAGTTTCCTTAGTCCCTACCTCTGAAGAGGGAAATCAATCTGAATTTCTTGATAATAAAGAAGTTTCAGAAACTTGTGACCTCGGCACTGAATCACATCCAATGAGTGAGTTGCAGTCTACTGAAAGCATAAATCCAGATCAGGAAGTTATTAGGGCATATGAGAGGAAATGTCTTCCATTTTCGTTGGACAGCAATAATTCAGATCGGTTTAAGCAGTTTGATATGATAGATAATTGCCCAGACCATCACTTTTTTGATGAGAGAAAAGGGTTGGCATTATCTCAGGTAAAAAGAGGATGGGTGAAAAAGGTTCAGCAAGAATGGAGCATCCTGGAGAGAAATCTTCCTGAAACTATTTATGTCCGTGTCTTTGAAGAAAGAATGGATCTCTTGCGAGCAGCAATTGTTGGTGCACCTGGAACTCCTTATCATGATGGGTTATTCTTCTTTGATATATGTTTCCCTCCGGAATATCCTAATGGACCACCTATGGTGCACTACAACTCTGGTGGGCTCCGATTAAATCCTAATTTGTATGAATCAGGGAAAGTCTGTCTGAGTCTCCTAAATACCTGGACTGGTACAGGCACCGAAGTGTGGACCCCCTGGGTCTCCACAATTCTTCAACTCCTTCTCTCTCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGACCAGCAGATTGGCAGAGCTGAAGGAGAGAAAAACTCAGTGAGCTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATGCTGTATCTGTTACGAAAGCCACCCAAGCATTTTGAGGCACTTGTGGAAGAGCACTTCAACCATCGCTCCCAGCATATCCTTCTTGCTTGTAAGGCGTACAGCGAAGGAGCTCCCATTGGATGTGCTTTTGGATGTGAAAAAACCGAGCATGAAAGTCAGAAGGGGACTTCGACAGGTTTTAAAATCATGCTTGCTAAGCTCTTCCCCAAACTAGTAGAGGCATTTTCTGATAAAGGAATTGATTGCAGCCAATTTGTTCAGCTGCAAAAATAA 2778 0.423 MDITDSDWETFSESSSTEDQEENDFLYGGQARSILSSLEESIWKIDDFLSFERAFVHGDVVCFLSDPSGQMGRVTNVDVFVDLENIQGKVFKNVSSKRLLKIRSISEGDFVIKGPWLGRVQRVVDKVTVLLDDGAKCEVIALERENLLPLTRNLLEDSQYPYYPGLRVRVKSSTSSKSARWLCGTWRDNQDKGTVCAVEAGLVYVNWLAFVPMGPSFNVNAPTRWQDSKNLTLLSCFSHATWQLGDWCMLALADQMEQNFQNASTGDLNDEHIMARGCKNRNLNSNIRELFVIGKIRTKVDIVWQDGGHSSGVDPHTLLPVNVINTHEFWPQQFVLEKGASDDLPKPSSQRWGVVQCVDAKERTVKVQWNTVFISEPGTLAGDRMEETVSAYELVEHPDYSYCFGDIVFKAAQKQLGYQADKNQAKSATDLNVEAAPIDRNHISYQNEFPDNCFLSRIGNVTGFKDGAVEVKWATGLTTKVAPYEIFQIDKHEGSTETPVPSEADVGELTQETIEHGNLTSDEKGKGLLDFDSDRENCEKHSGEPSSFSLPQAAIELFSSIKASIFQTLGVTSLSVAVSLVPTSEEGNQSEFLDNKEVSETCDLGTESHPMSELQSTESINPDQEVIRAYERKCLPFSLDSNNSDRFKQFDMIDNCPDHHFFDERKGLALSQVKRGWVKKVQQEWSILERNLPETIYVRVFEERMDLLRAAIVGAPGTPYHDGLFFFDICFPPEYPNGPPMVHYNSGGLRLNPNLYESGKVCLSLLNTWTGTGTEVWTPWVSTILQLLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLVTCKSMLYLLRKPPKHFEALVEEHFNHRSQHILLACKAYSEGAPIGCAFGCEKTEHESQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFVQLQK 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2378 925 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 5 917 - -
Glsi11g2378 925 SUPERFAMILY UBC-like 671 845 IPR016135 -
Glsi11g2378 925 MobiDBLite consensus disorder prediction 1 20 - -
Glsi11g2378 925 FunFam Probable ubiquitin-conjugating enzyme E2 23 638 914 - -
Glsi11g2378 925 SMART ubc_7 679 836 - -
Glsi11g2378 925 MobiDBLite consensus disorder prediction 1 22 - -
Glsi11g2378 925 MobiDBLite consensus disorder prediction 514 546 - -
Glsi11g2378 925 Gene3D Ubiquitin Conjugating Enzyme 639 917 IPR016135 -
Glsi11g2378 925 MobiDBLite consensus disorder prediction 517 542 - -
Glsi11g2378 925 Pfam Ubiquitin-conjugating enzyme 681 827 IPR000608 -
Glsi11g2378 925 CDD UBCc 678 831 IPR000608 -
Glsi11g2378 925 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 676 836 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2378 Glsi-ChrGlsi11 16694474 16699292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2378 19 919 Miscellaneous Gene Families AT2G33770 53.180 0.0 923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2378 11 16694474 16699292 Glsi11g2378 11 16694474 16699292 ECH