Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1229 ATGGCTACCCCTCTGTTGGAACCCTTGCCTTCTGGAACAGGTTCAAAGCTTCAAACTTTGGGGAGCATCATAGTCTCCATCGTTGATGTCTTGTCATCAAAAGGTTTCATAAAGTCTCCCTGGATACAGGTTCAGTGCAGAGAGAAGTCAGCATCAGAAGGATCATTAGTGGAGGCAAAAACATATGGAGACTTGGGTTATAGAAACCTAGGAACCTCAGGTCGGCATCTGACAGAAACACTAATATTGTTATCACAATGCGGAGGGTCGGTTGCATATCTGGTATTCATTGGACAAAACCTCCAATCTGTGTTCCAACACCATGGACTCACATTAACATGCTACATAATTTTGTTAGAGTCAATTGAAATTGGATTTTCATGGATTGGGAACTTATCTGCTTTAGCACCTTTCAGCATTTTTGCTGATGTTTGCAATGTGCTAGCCATGGGAACTGTACTAAAGGAAGATATGCAAGCGTTAAATTCTATGCGGGATAAAGCAAAATTCCCAGTTTTGCTGCCTCATGCTTTTAGTGGGATAACCCTTGTGTACATTCTTTTTGGGTTCTGTGGCTACATGGTTTATGGCGATCAAACCAGAGATATTGTAGGATTATGCTTAGGGCTTGTGTTCACATTCCCCATCATGGTACACCAAGTAAATGAGATTGTGGAAGAAAAGTTTGAAAGGTTCAAAAAGCATTACCACAATGACAGTAATGATTATTCAACTAGACTGGGAAAGAGTGGGATCTACATCACTCGTGCAATTGTGGTGGTTGTCCACATTTCACCTAAATCGGTTTCGCTCTTCTCTCCATCTCTGGCAAAAGACCTTGGATTTCGCTCTATTGTTCTGTGGATTATTTTTTGCTGTTTAGGGCACTTACAGCACCGTAGTTGGAGTTTGAATGCATCAGCACCTGTGTCCTACTCAGTTCGAGCCTTAAATGGCAACAATGTTTTGTCTTTGCGTGTATGCTTGTGGAGGCCAGAGCATCATGTCACTTCACTTGGAATAATCCCAAAAACTCGAACTTATCTACTTAGGTTGGCCTCGCATAATGCCGTTTCCGTCATTTTCATCGCTTGTTTCATTATGAGCCAGGGTACCTTTCTCTCCAATCTTTTTCTTTCAGAGAAAATGGTTCAGTTTCTGTCAAAGCCTGCCACCATCTTCACAGCAAAGTCCTCTCCTTTGGGCACCTTCCTCGTCATACTTATCCTCTTCATTCTGGGTTTTTACACCCTGCATTACCCACGCTCTTCTTCACCTGCTTCTATTCCTCAAAGTGCGTCTCACTTCCGGAACATTTTCCTTTCCTCTGCCTCCAACTTTACCCTTTCCTCCTACCTCCGCGCCCTCACCCTCCACCCGCATCTCGCTGGAACAAAACTCGCTTCCGATACCACGCGTTATGTTCTTAACCATTTCAGGGACCTGGGACTTCAAACACACACTGTGAGCTACAAGAGCCTGCTCTCTTACCCTGTGCACTCCTCCATCTCGATGCATTTTAGTGACGGGTCCTTCGAGGAGCTTCCCTTAACTGAGTTTGGTCGGTCTAATCAGGTTGGCCAGGAGGTGGTGCCACCTTACCATGCGTACTCGCCATCTGGGTCGGCGTACGCGAAAGCGGTGTTCGTAAATTACGGAAGGGAAGAGGACTACCGTGCGCTTGGGGTACTTGGAGTGAACGTTAGCGGATGCATAGTAATAGCGAGGAAAGGTGGCGTTTTGACAAGAGGCGCGGTGGTTGAGAGGGCGGAGGCCAATGGTGCGGTGGCGGTGCTGATGTACGCCGATGGGAACAGGTTTAAGAAGGGCTTTGAGCGAGGACATGTAATGAGAGGCATAGGGGACCCACTCAGCCCTGGGTGGCCTGGGGTTGATGGGGCCGAGAGCTTGGATTTGGAAGATAGTGAGGTTTTGAAAAGGTTCCCCAAAATTCCATCCATGCCCCTGTCCTCTGAGACCGCTGAGACCATTATATACTCGCTTGGAGGCGCACCGGTGCCCCAGGAGTGGAGGAGCACGCTGCGGTCCAAGGTCTGGCATGTTGGTCCTGGTCCTACAATACTCAATTTTACTTACCAGGGGGAAAAAAAGGTGGCTACCGTTCACAATGTTTTTGCCTTCATAAAGGGATTGGAAGAACCCGATCGCTATGTTTTACTTGGGAACCACAGAGATGCGTGGACATATGGTGCTGTTGATCCCAGCAGTGGAACTGCCGCCCTACTTGACATTGCTCGTCGATATTCTCTTCTATTGCGTTTGGGGTGGACTCCACGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAGTTCGGAATGATAGGATCCACTGAATGGGTTGAACAAAACCTTGTGAATCTGGGTTTCAAAGCTGTAGCTTACCTTAATGTGGACTGTGCTGTACAAGGGCGTGGTTTCTTTGCTGGCTCAACTCCTCAGCTAGACAACCTTCTTCTTGAGGTCACAAAAAAGGTTGGCGATCCTGACTCAGAGGGTGAAACAGTATATGAGAATTGGACAGCGGCCATTGGATATTCTAATATTCAGAGGCTCAGTGGAGTTGATTCTGACTTTGCTCCATTTGTGCAACACGCAGGGGTTCCGTCTATTGATGTGTATTATGGAAGAGACTTTCCAGTCTATCACACTGCTTTCGACTCTTATAATTGGATGGCAGAGTATGGAGATCCCTTATTTCAGCGCCATGTGGCTGTTGCTGGAGTTTGGGGACTTTTAGCCCTTCATCTGGCTGATGATTCCATTCTTCCTTTCAATTACCTTCCTTATGTAGATCAGTTACAGGTGTACAAGAACATATTGAGCAACTTGTTAGACCAACGAATCTCTTTAAATCCATTAACAATGTCAATAGAAGAATTTGCTTCTGCTGCCAAAGAAGCTGAGGATGAATCAAAGAAACTCAGATTGCAAGATGACGCAGGTTGTTCTGTTATGAAAAAGCGAGCACTGAATGATAGACTAATGCTTGCTGAGAAAGGCTTCTTGGATGCAGATGGACTTCCTGGAAGACACTGGTTCAAGCATCTTGTGTTTGGGCCTCCCAGCAACCATGAAAGCAAGCTGGATTTCTTCCCTGCTATTGCCGATGCTATTACTTTGTCAACCAGAGTGAGTGAAAAAGAAGGGCTGGCAGCAATTCAGCACGAGGTCTGGAGAGTTGCCAGAGCAATTCAAAGAGCTGCTTCCGCGCTGAGAGGAGAATGCACCTGA 3255 0.4648 MATPLLEPLPSGTGSKLQTLGSIIVSIVDVLSSKGFIKSPWIQVQCREKSASEGSLVEAKTYGDLGYRNLGTSGRHLTETLILLSQCGGSVAYLVFIGQNLQSVFQHHGLTLTCYIILLESIEIGFSWIGNLSALAPFSIFADVCNVLAMGTVLKEDMQALNSMRDKAKFPVLLPHAFSGITLVYILFGFCGYMVYGDQTRDIVGLCLGLVFTFPIMVHQVNEIVEEKFERFKKHYHNDSNDYSTRLGKSGIYITRAIVVVVHISPKSVSLFSPSLAKDLGFRSIVLWIIFCCLGHLQHRSWSLNASAPVSYSVRALNGNNVLSLRVCLWRPEHHVTSLGIIPKTRTYLLRLASHNAVSVIFIACFIMSQGTFLSNLFLSEKMVQFLSKPATIFTAKSSPLGTFLVILILFILGFYTLHYPRSSSPASIPQSASHFRNIFLSSASNFTLSSYLRALTLHPHLAGTKLASDTTRYVLNHFRDLGLQTHTVSYKSLLSYPVHSSISMHFSDGSFEELPLTEFGRSNQVGQEVVPPYHAYSPSGSAYAKAVFVNYGREEDYRALGVLGVNVSGCIVIARKGGVLTRGAVVERAEANGAVAVLMYADGNRFKKGFERGHVMRGIGDPLSPGWPGVDGAESLDLEDSEVLKRFPKIPSMPLSSETAETIIYSLGGAPVPQEWRSTLRSKVWHVGPGPTILNFTYQGEKKVATVHNVFAFIKGLEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRYSLLLRLGWTPRRTIILCSWDAEEFGMIGSTEWVEQNLVNLGFKAVAYLNVDCAVQGRGFFAGSTPQLDNLLLEVTKKVGDPDSEGETVYENWTAAIGYSNIQRLSGVDSDFAPFVQHAGVPSIDVYYGRDFPVYHTAFDSYNWMAEYGDPLFQRHVAVAGVWGLLALHLADDSILPFNYLPYVDQLQVYKNILSNLLDQRISLNPLTMSIEEFASAAKEAEDESKKLRLQDDAGCSVMKKRALNDRLMLAEKGFLDADGLPGRHWFKHLVFGPPSNHESKLDFFPAIADAITLSTRVSEKEGLAAIQHEVWRVARAIQRAASALRGECT 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1229 1084 FunFam Os01g0740650 protein 701 931 - -
Glsi11g1229 1084 Pfam Peptidase family M28 710 897 IPR007484 -
Glsi11g1229 1084 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 401 1081 IPR039373 -
Glsi11g1229 1084 Gene3D - 501 701 - -
Glsi11g1229 1084 Pfam PA domain 530 610 IPR003137 -
Glsi11g1229 1084 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 932 1082 - -
Glsi11g1229 1084 Pfam Transferrin receptor-like dimerisation domain 956 1079 IPR007365 -
Glsi11g1229 1084 Pfam Transmembrane amino acid transporter protein 40 149 IPR013057 -
Glsi11g1229 1084 Pfam Transmembrane amino acid transporter protein 162 282 IPR013057 -
Glsi11g1229 1084 SUPERFAMILY PA domain 494 712 IPR046450 -
Glsi11g1229 1084 Gene3D - 935 1084 IPR036757 -
Glsi11g1229 1084 SUPERFAMILY Transferrin receptor-like dimerisation domain 931 1081 IPR036757 -
Glsi11g1229 1084 Gene3D Zn peptidases 449 931 - -
Glsi11g1229 1084 CDD M28_PSMA_like 706 932 - -
Glsi11g1229 1084 SUPERFAMILY Zn-dependent exopeptidases 451 929 - -
Glsi11g1229 1084 Coils Coil 965 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1229 Glsi-ChrGlsi11 7689664 7701001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1229 4 261 Organic Solute Cotransporters AT3G11900 42.151 2.56e-71 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2482 02 74740730 74746044 Glsi11g1229 11 7689664 7701001 CCT
Glsi11g1229 11 7689664 7701001 Glsi11g1229 11 7689664 7701001 ECH