Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0602 ATGTCTGAAAGTATTGATCGCTGCATAATATTTGTATCTCTTCCTCTTAATATTCAACATTTATCTTGTCTGCATTCTCTGGTCTTCACGCAGAAACAGAATCACACTAACATATACCCGCCAAATGCTCAGTCACCGATGATGCAATTTAACGAAATAAACACCACAGCCGTTTCCTTCTCCCCCTTCTTCTCTCTCTTCACTCCTTTTCTTCGGCCTGTAAAAATGTTGTTCTTCTCGTACTTCAAAGACTTGGTGGGCAGAGAAGTAACGGTGGAGCTCAAGAACGACTTGGCGATCAGAGGGACCTTGCACTCGGTTGACCAGTACCTGAACATCAAGCTCGAGAACACACGCGTTGTCGATCAAGACAAGTACCCCCACATGCTTTCCGTGAGGAACTGCTTCATCAGAGGGTCGGTGGTGAGATATGTACAATTACCTCCAGAAGGAGTGGACATAGAGCTATTGCATGATGCCACAAGGAGAGAAGCTCGTGGTGGCTAA 507 0.4556 MSESIDRCIIFVSLPLNIQHLSCLHSLVFTQKQNHTNIYPPNAQSPMMQFNEINTTAVSFSPFFSLFTPFLRPVKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0602 168 CDD LSm2 77 165 IPR016654 GO:0006397
Glsi11g0602 168 Gene3D - 69 167 - -
Glsi11g0602 168 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 76 166 IPR016654 GO:0006397
Glsi11g0602 168 FunFam U6 snRNA-associated Sm-like protein LSm2 76 168 - -
Glsi11g0602 168 SMART Sm3 80 147 IPR001163 -
Glsi11g0602 168 Pfam LSM domain 82 146 IPR001163 -
Glsi11g0602 168 SUPERFAMILY Sm-like ribonucleoproteins 78 167 IPR010920 -
Glsi11g0602 168 ProSiteProfiles Sm domain profile. 77 151 IPR047575 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0602 Glsi-ChrGlsi11 3814120 3818706 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3234 02 80527293 80531536 Glsi11g0602 11 3814120 3818706 CCT
Glsi11g0602 11 3814120 3818706 Glsi11g0602 11 3814120 3818706 ECH