Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0424 ATGAAGATGAATTGTAGACGTCTGATTTCCGACGGAGGGTGGCTACTCAGGCAGATGTGTACGGCGGTGACGAAGCTGGCGGAAGCGGAGATGGAGCATTCGGGGAATAAGTTAAGCCTTTATCGAAGGTTATCAGCGCTGGAAATGACGGGAGGGAGCGTGTCGCAAACATTGAACCAGTATATTATGGAGGGTAAAGTCATCAGGAAAGATGAGCTGCAACGGTGTGTCAAGGAACTTCGAAAGTATCGTAAATTCCAGCATGCACTCGAGATAATGGAATGGATGGAGTTGAGGAGAATCAACTACTCCTACGTTGACTTTGCAATATATTTAGACCTGACATCCAAAACCAAGGGGGTGGTTGCGGCTGAGAATTATTTCAATGGTCTCCCTCCTCGAGCTAAGAACAAATTGACATATGGAGCTCTTTTGAATTGCTATTGCACGGAATTAATGGCAGATAGGGCATTGGCTCTTTTTGAAAAGATGAATGAACTAAATTATGTCACTAACCTGGCCTTCAACAATCTCATGTCTCTGTATATGAGACTCGATCAACCTGAGAATGTGCCTCCGTTAGTACATGATCTGAAGCAGAGGAAAATTCCGATGGCTGCTTTTACATATCATGTCTGGATGAATAGTTATGCTTCTTCAAATGATATTGAGGGAGTAGAAAGAGTCTATGAGGCGATGAGAAAAGAAGATGAGGACAAAATCAGTTGGCAGACTTATTGCAACCTTGCTGCTATTTATGTAAAGGCTGAACATTTTGAGAAAGCTGAATTGTTGCTTAAGATGGTAGAAAAAGAGGTGAAACCCCAGCGGCGCGATGCTTACCATTTCTTGCTTACCCTTTATGCAGGGACTTCTAATCTAGGTGAAGTTTATAGGGTATGGAATTCCCTCAAGTCAGTCTCTCCAGTGACCAATATGAGCTATCTTGTGATGCTTCAGACCCTTCGCAGGCTTAATGATATTGAGGGTTTAACAACATGCTTTAAGGAATGGGAATCCAGTTGTACCAGTTATGATATAAGGTTAGTCAATACTGCTATAAGTGCGTACTTGAGTCAGGACTTGTATGAAGAAGCTGCATTCGTTTTTAAAAATGCGCTCAGCAGGAGCAAAGGACCTTTCTATAAGATTCATGAAATGTTCATAATCTTCTTCTTGGAGAATCGTAAGGTAGACCTTGCTGCGTGTCACCTAGAGGCAGCTCTTTCAGAAGTCAAGGATGATGAATGGTGTCCTTCACCAGAAGTTGTAAGTGCATTTCTGAAGTATTATGATGAGGAGAAGGTTGATGGTGTTGAGAAGCTTCACAAGATTCTGAAGACTTACAATGTTGATAATTCCTTTCTCAGAACTTATAAAACTGCTGGCAAATCAGCTCCAAAAATGCATCAAATATCGAAGGTGGATTCTGAAATAAGCCAGGGGCTTGAGGACTCGCAAGCGGAGGTCCACTTTGAGTAG 1482 0.4231 MKMNCRRLISDGGWLLRQMCTAVTKLAEAEMEHSGNKLSLYRRLSALEMTGGSVSQTLNQYIMEGKVIRKDELQRCVKELRKYRKFQHALEIMEWMELRRINYSYVDFAIYLDLTSKTKGVVAAENYFNGLPPRAKNKLTYGALLNCYCTELMADRALALFEKMNELNYVTNLAFNNLMSLYMRLDQPENVPPLVHDLKQRKIPMAAFTYHVWMNSYASSNDIEGVERVYEAMRKEDEDKISWQTYCNLAAIYVKAEHFEKAELLLKMVEKEVKPQRRDAYHFLLTLYAGTSNLGEVYRVWNSLKSVSPVTNMSYLVMLQTLRRLNDIEGLTTCFKEWESSCTSYDIRLVNTAISAYLSQDLYEEAAFVFKNALSRSKGPFYKIHEMFIIFFLENRKVDLAACHLEAALSEVKDDEWCPSPEVVSAFLKYYDEEKVDGVEKLHKILKTYNVDNSFLRTYKTAGKSAPKMHQISKVDSEISQGLEDSQAEVHFE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0424 493 FunFam Pentatricopeptide repeat-containing protein mitochondrial 70 279 - -
Glsi11g0424 493 PANTHER OS12G0527900 PROTEIN 32 474 - -
Glsi11g0424 493 Gene3D Tetratricopeptide repeat domain 53 184 IPR011990 GO:0005515
Glsi11g0424 493 Gene3D Tetratricopeptide repeat domain 193 325 IPR011990 GO:0005515
Glsi11g0424 493 SUPERFAMILY TPR-like 206 315 IPR011990 GO:0005515
Glsi11g0424 493 Pfam PPR repeat 208 236 IPR002885 -
Glsi11g0424 493 Pfam PPR repeat 140 168 IPR002885 -
Glsi11g0424 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Glsi11g0424 493 NCBIfam pentatricopeptide repeat 208 237 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0424 Glsi-ChrGlsi11 2808302 2810181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0424 39 434 EF-hand Containing Proteins AT1G02150 34.250 7.24e-73 238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0424 11 2808302 2810181 Glsi02g2573 02 75566273 75568041 CCT
Glsi11g0424 11 2808302 2810181 Glsi11g0424 11 2808302 2810181 ECH