Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0307 ATGCTAGAGAAACAGCTTTCTGGGCACCGCGTAGATCGATCCATTTGTGCCTGGTTCTGGGAGCAGGTCATTTCAGACTTCAAGCTGCTGGATGAGATGATAGACAATGGCTTCCCTCTGATTACAGAACCTAATATCTTACAAGAAATGATAGCTCCACCAAATATTGTCAGCGAAGTTTTGATTTTTGTGACTGGCAGCAGTTCAAATGTTAGTGACACCCTTCCAGGTGCAACAGCATCTTGTGTTCCCTGGAGAACAGGGGACCCGAACTATGCCAACAATGATGTTTATGTAGATCTTGTTGAGGAAATGGATGCAATAATAAGCAGTGTTATAAAACTCTGTTCTTTCGGGGATGGAGTTCTGGTGAAATGTGAGATCTACGGTGAAGTTCAAGTAAATTCCCATATCACCGGTCTTCCCGATTTGACTCTTAAATTTGCTAATCCTTCACTTCTTGTTGATGTGAGGTTCCATCGCGGTGTTCGATTTCAGCCCTGGGAAACTCATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAAAAATCTTTGTGCCTTTCTATCGATGGGATGATGGGGTGAAATTAGAGCCTTGCTTCCCAAGACAGCATTTTATCAGAGCATCACCGCCTATAAATAGTCGTATGTCTTTCACGTGA 684 0.4269 MLEKQLSGHRVDRSICAWFWEQVISDFKLLDEMIDNGFPLITEPNILQEMIAPPNIVSEVLIFVTGSSSNVSDTLPGATASCVPWRTGDPNYANNDVYVDLVEEMDAIISSVIKLCSFGDGVLVKCEIYGEVQVNSHITGLPDLTLKFANPSLLVDVRFHRGVRFQPWETHQILSFVPPDGQFKLMSYRKIFVPFYRWDDGVKLEPCFPRQHFIRASPPINSRMSFT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0307 227 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 83 103 IPR018240 GO:0006886|GO:0016192|GO:0030131
Glsi11g0307 227 Gene3D - 27 59 - -
Glsi11g0307 227 Gene3D Mu homology domain, subdomain B 83 189 - -
Glsi11g0307 227 Pfam Adaptor complexes medium subunit family 83 189 IPR028565 -
Glsi11g0307 227 PANTHER AP COMPLEX SUBUNIT MU 27 189 - -
Glsi11g0307 227 PRINTS Clathrin coat assembly protein signature 16 43 IPR001392 GO:0006886|GO:0016192|GO:0030131
Glsi11g0307 227 PRINTS Clathrin coat assembly protein signature 154 181 IPR001392 GO:0006886|GO:0016192|GO:0030131
Glsi11g0307 227 PRINTS Clathrin coat assembly protein signature 85 113 IPR001392 GO:0006886|GO:0016192|GO:0030131
Glsi11g0307 227 SUPERFAMILY SNARE-like 28 58 IPR011012 -
Glsi11g0307 227 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 83 190 IPR036168 -
Glsi11g0307 227 ProSiteProfiles Mu homology domain (MHD) profile. 94 227 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0307 Glsi-ChrGlsi11 2018947 2022289 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3593 02 82807975 82811507 Glsi11g0307 11 2018947 2022289 CCT
Glsi11g0307 11 2018947 2022289 Glsi11g0307 11 2018947 2022289 ECH