Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2755 ATGGATCCAATCGAAGCAGCGAACGAGCTGGCTTTTCGGGTCGGGTTCTCCGGTCACAGTGGCCACCTCCGAGTGGAACCTCTGTCGACGGTGGAGCGTTCCAAACCATTGAGATCGCTTCCCGATTTTATTCTGCCACCTGCATTTCCAAAGGAGACACCTGAATCTATAAAGAAGTACATAGAAGAAACATATCTCTGGCCCAGATTGGACCCTGATGAATTTTCACCAGAGAAAGCTGGGAGGCAGTGGGAATTTGACTGGTTTGAAAAAGCTGAAGTGCCTCTGGAGCCTTCTTTGCCACGGTCTGTTGTGGTTCCAATTTGGGAACCACCCTTTCTACGCCCAAACAATGGTTCAGTGCAAGGAAAATGGGAACCAAATTCTGAGGAGGTGGATGTATCAGAACTAATGTCAGGGGCGGAAGAATCAGGGCCATTACCACGGACTTCTGGGCCTGCAAAGGACCTTGTAAGGGGAAGTATTAATAGTCGCCCTTTTCGTCCAGGAGGTTTGGATGACTCCCAAGCTTTAGAAAGAATTTTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGCGAAGTTTTGAATGGTGGCCCTGCTCTGACAATTCCCCCAAGCTTAAAGCAAGGGTTGGACCTCGGAGTTCTTAAGTCATATCCATGCTCGTGGAATGTTTACAAGGATGCCAGTTTGCTTAAGAGTTCATCAGATGAAAAGAGTGAGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGATTACGCTGTCACAGAACAAGAGGATGATGGTCATTTATCAGAACCGGATTCTATTATGTTGGAAGCTGAAGTTGATAAGGTTGAGGTATCTAGCAGTATGCGTGAGAATGAATTTTCATTAGATGAGATTTTGTCAACTGAATCAGAAGGTTCAAAATTGCATTTGGATGGATTTAGTGATGGCGGTGGACAGCCGCAGAAGGAGGCTTGGGCAATTCGTGGAGAAAATGAAGGGATAGCAGATCACTTTCATGAACTTGTTCCTGATATGGCACTTGAGTTTCCGTTTGAATTGGATGCATTTCAGAAGGAGGCTATATATTATCTTGAGAAGGGGGAATCTGTTTTTGTTGCTGCTCACACGTCAGCTGGAAAGACAGTAGTTGCAGAATATGCATTTGCTTTAGCCTCAAAGCACTGCACTAGGGCTGTATATACTGCTCCAATTAAAACCATCAGCAATCAGAAATATAGAGATTTCTGTGGGCAGTTTGATGTTGGGCTGCTTACTGGTGATGTAAGCTTGAGACCAGAGGCTTCTTGTCTCATCATGACCACAGAAATATTAAGATCGATGCTCTACCGTGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGATGAAGTGCACTATGTCAATGATGTTGAAAGAGGTGTTGTTTGGGAAGAAGTAATTATCATGCTTCCAAGACACATCAATATCATCCTTCTGTCAGCCACGGTACCTAATACAGTTGAATTTGCTGATTGGATTGGTCGGACAAAACGAAAGAAAATCCGGGTTACAGGGACAACGAAAAGACCAGTCCCATTGGAGCACTGTCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAGTGAAAAATTTCTGCCTCAAGGACTGAAAGCTGCTAAAGATGCATTGAAGAAAAAGAATTTAACTACTGCTGGTGGTGGTGGTTCCAGACAATATTCAGGGACTTCAGCAAGTCATGACAGTAATCGACTTCAGAAACGTGAAAATGCAGCTCGAGTAAAACACCATGGAGGTAGTTTCTTCAAAACTGGTAGAGGCTATCAGAATAATGGAAATGTCCAGAGCAATTGGGAACTCAGGAGGGCAGAGGCTTCAAAGTGGTTGATGCTTATCAACAAGCTCTCCAAAAAGTCACTGTTGCCTGTTGTAATATTTTGCTTTTCCAAGAATCGCTGTGATAAATCGGCTGATAGTATGACTGGAACTGACCTAACTAGTAGCTCAGAGAAAAGTGAGATCCGTGTTTTCTGTGACAAAGCATTTTCACGACTGAAAGGATCTGACAGAAATTTACCACAGGTAGTTCGTGTCCAAAATCTTCTTCGTAGAGGGATTGGTGTGCATCATGCTGGCCTTCTTCCAATAGTAAAGGAAGTAGTTGAAATGCTATTTTGCCGTGGTGTTATCAAGGTATTATTTTCAACAGAGACATTTGCAATGGGAGTCAATGCACCTGCTAGAACAGTAGTCTTCGATACTTTAAGGAAGTTTGATGGTAAGGAATTCAGGCAGTTACTACCGGGAGAATATACTCAAATGGCCGGTCGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTGTTCTAATGTGTCGTGATGAAATTCCAGAAGAGAGGGATTTAAATCATGTTATTGTTGGAAGTGCAACCCGTCTAGAATCTCAATTTCGACTTACCTATATTATGATCCTCCATCTTCTACGGGTTGAAGAATTGAAGGTGGAGGATATGCTCAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCAGAAATGCAACAACTTTTGAACCTAAAGCTTAATCAGCACACAAAAGCTATTGAATGTATAAAGGGAGAGCCGACCATCGAGGAATATTATGAGACATACTCAGAAGCTGAGATGTACAACAACCAAATATCAGAGGCAATTTTGCAGTCCCCTAGTTCCCAACAATTTCTCTCTCCTGGAAGAGTCGTTGTCTTGAAATCAGAAACAGCCCAGGATCACTTGCTTGCAGTGGTTGTTAAAACACCTTCTGCAAATTATAAGCAGTACATTGTTCTGGTGGTCAAACCTTATTTGCCTTTCCCAGCAGCTAATGCTCCAAGCGGTGGAAACTTGCAAGATAAAAGCAATAAATTTAATGAAGGTTATTTTGTGGTGCCAAAATCAAAACGTGGTCTAGGAGACGAGTATACCACATCTGTTTCAGCTCGTAGAGGAACAGATGTTATCAACATCCAACTGCCTCATCATGGTTCTGCCTGTGGAATGAGTTACGAGGTTAGAGGAGTTGATAGTAAAGAGTTTCTATGCATTTGCAGTAGAAAAATTAAAATTGATCAAGTTGGACTTCTTGAAGATGTTAGCAGTGCTGCTTACTCCAAGACCGTTCAGCTGCTCCTGGATTTGAAATCAGGTGGAAATAAGTTCCCTCCAGCCCTGGATCCTGTGAAAGATCTGAAGTTGAAGAATGTTGAACTTGTGGATACATACCACAAGTGGACTGCATTATTGGAGAAGATGGCCCAGAATCAGTGTCATGGGTGTATAAAATTGGAAGAGCACATTAAGTTAGCAAGAGACATAAAAAAGCACAGAGAAGAAGTCAACGCTCTTCAATATCAAATTTCAGATGAAGCACTTCAACAGATGCCAGACTTTCAGGGCCGGATAGATGTTCTGAAGACAATAGGCTGCATAGATGATGACCTTGTTGTACAAATGAAAGGTCGAGTTGCTTGTGAGATGAACTCTGGGGAGGAATTGATATGCACCGAATGCTTGTTTGAGAACCAACTGGATGAACTAGAACCAGAAGAAGCAGTAGCATTAATGTCTGCTTTTGTGTTCCAGCAGAAGAACACTTCTGAACCTTCACTAACATCCAAGCTCTCTGAAGCAAAACAAAGATTATACAATACAGCAATAAGACTTGGAGAGCTTCAAGTGCAGTTCCATCTGCCAATAAATCCTGAAGAGTATGCCCAAGAAAATCTCAAATTTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCATTTGCTGACATCTGTGAGCTTACAGATGTTCCAGAAGGCTTGATAGTGAGGACCATTGTAAGGCTGGATGAGACATGTCGGGAGTTTAAAAATGCTGCAGCTATTATGGGTAATTCTGCTCTTTTGAAGAAAATGGAAATTGCTTCCAATGCAATAAAGCGTGACATTGTTTTTGCAGCTAGCTTGTACGTTACTGGCGTATGA 4038 0.4212 MDPIEAANELAFRVGFSGHSGHLRVEPLSTVERSKPLRSLPDFILPPAFPKETPESIKKYIEETYLWPRLDPDEFSPEKAGRQWEFDWFEKAEVPLEPSLPRSVVVPIWEPPFLRPNNGSVQGKWEPNSEEVDVSELMSGAEESGPLPRTSGPAKDLVRGSINSRPFRPGGLDDSQALERIFPEGASNGEWVREVLNGGPALTIPPSLKQGLDLGVLKSYPCSWNVYKDASLLKSSSDEKSELSLQFDDLFKKAWEDYAVTEQEDDGHLSEPDSIMLEAEVDKVEVSSSMRENEFSLDEILSTESEGSKLHLDGFSDGGGQPQKEAWAIRGENEGIADHFHELVPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGQFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKRKKIRVTGTTKRPVPLEHCLFYSGELYKICESEKFLPQGLKAAKDALKKKNLTTAGGGGSRQYSGTSASHDSNRLQKRENAARVKHHGGSFFKTGRGYQNNGNVQSNWELRRAEASKWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVLMCRDEIPEERDLNHVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLNLKLNQHTKAIECIKGEPTIEEYYETYSEAEMYNNQISEAILQSPSSQQFLSPGRVVVLKSETAQDHLLAVVVKTPSANYKQYIVLVVKPYLPFPAANAPSGGNLQDKSNKFNEGYFVVPKSKRGLGDEYTTSVSARRGTDVINIQLPHHGSACGMSYEVRGVDSKEFLCICSRKIKIDQVGLLEDVSSAAYSKTVQLLLDLKSGGNKFPPALDPVKDLKLKNVELVDTYHKWTALLEKMAQNQCHGCIKLEEHIKLARDIKKHREEVNALQYQISDEALQQMPDFQGRIDVLKTIGCIDDDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEAVALMSAFVFQQKNTSEPSLTSKLSEAKQRLYNTAIRLGELQVQFHLPINPEEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALLKKMEIASNAIKRDIVFAASLYVTGV 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2755 1345 SMART DSHCT_2 1164 1342 IPR012961 -
Glsi10g2755 1345 FunFam Ski2 ATP-dependent RNA helicase 1117 1342 - -
Glsi10g2755 1345 Pfam Ski2 N-terminal region 79 220 IPR040801 -
Glsi10g2755 1345 Pfam rRNA-processing arch domain 841 1141 IPR025696 -
Glsi10g2755 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 799 IPR027417 -
Glsi10g2755 1345 MobiDBLite consensus disorder prediction 567 593 - -
Glsi10g2755 1345 MobiDBLite consensus disorder prediction 118 174 - -
Glsi10g2755 1345 FunFam ATP-dependent RNA helicase SKI2 319 526 - -
Glsi10g2755 1345 CDD SF2_C_Ski2 635 798 - -
Glsi10g2755 1345 Pfam DEAD/DEAH box helicase 358 505 IPR011545 GO:0003676|GO:0005524
Glsi10g2755 1345 PIRSF SKI2 48 1342 IPR016438 GO:0003723|GO:0003724|GO:0006401
Glsi10g2755 1345 Gene3D - 319 526 IPR027417 -
Glsi10g2755 1345 Gene3D - 527 819 IPR027417 -
Glsi10g2755 1345 Gene3D - 1123 1342 - -
Glsi10g2755 1345 Gene3D - 820 887 - -
Glsi10g2755 1345 Pfam DSHCT (NUC185) domain 1168 1337 IPR012961 -
Glsi10g2755 1345 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 833 IPR001650 -
Glsi10g2755 1345 SMART helicmild6 700 786 IPR001650 -
Glsi10g2755 1345 FunFam DExH-box ATP-dependent RNA helicase DExH11 820 887 - -
Glsi10g2755 1345 FunFam DExH-box ATP-dependent RNA helicase DExH11 527 819 - -
Glsi10g2755 1345 SMART ultradead3 351 531 IPR014001 -
Glsi10g2755 1345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 518 IPR014001 -
Glsi10g2755 1345 MobiDBLite consensus disorder prediction 569 585 - -
Glsi10g2755 1345 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 255 1325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2755 Glsi-ChrGlsi10 49436725 49536065 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2755 10 49436725 49536065 Glsi10g2755 10 49436725 49536065 ECH