Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1729 ATGGCTGTTTTTGGAAGAATGAAATCTATGGCTCTGAATTTGATTCTGCTGCTTTTAGCAGTCCTTGTTGTTGCAGGTGACGAAGAACCTTTTATTGGTGTGAATATAGGAACAGATCTCTCAGATATGCCACATCCAACTCAAGTGGTAGCACTACTTAAAGCCCAACAAATTCGACATGTTCGATTGTACAATGCCGACCAAGCTATGCTCATTGCACTTGCAAAGACAGGCATTCAGGTTGTTGTGTCTGTCCCTAATGAAGAACTTCTAGGAATTGGTCAATCAAATTCCACAGCTGCAAACTGGGTTTCCCGCAATGTGGTAGCTCACTATCCAGCCACCAATATCACAGCCATTTGTGTCGGTTCTGAGGTTCTACCTACCCTCCCAAATGCAGCAAAAGTCCTTGTCAGTGCTCTCAAGTACATTCATTCGGCCCTAGTGGCATCTAATCTCGATCGCCAAATCAAAGTCTCAACCCCCCTTCCCTCCTATATCATCCTTGATTCATTTCCTCCTTCCCAGGCTTTCTTTAACCGCTCGTTGAACCCGGTTTTGGTCCCCATGCTTGATTTCTTGCAATCCACTAACTCTTATCTCATGCTCAATGTATACCCTTACTATGATTACATGCAGTCCAATGGTATAATTCCATTAGATTATGCACTCTCCAAACCTCTCCCTCCAAACAAAGAAGCTGTTGACTCTAACACTCTTCTGCATTACTCCAATGTCTTTGATGCAGTGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATTCCTGTAGTAGTGACAGAGTCAGGCTGGCCCTCCAAAGGAGCTTCAAATGAGCCTGATGCTACAGTAGACAATGCTAACACTTATAACAGTAATTTGATCAAACATGTGCTGAACAAAACTGGAACTCCCAAACATCCAGGCATTGCTGCTAGCACTTATATCTATGAGCTCTACAACGAGGACGCAAAACCCGGGCCACTGTCAGAGAAGAACTGGGGATTGTTTGATGCAGATGGGTCACCAATTTACATTTTACACTTGACAGGATCAGGAGCAGTCCTGGCAAATGATACCACTAATCAAACTTTTTGTATTGCAAAGGATGGTGCTGACCCAAAGATGGTGCAGGCTGCACTAGATTGGGCATGTGGACCTGGAAAAGTGGATTGCTCTCCATTGTTGCAGGGACAGCCTTGCTATGAACCGGACAATGTGATTGCACATGCAAATTATGCATTTGACGCTTATTATCTTAAGATGGGGAGGTCTCCTGAAGCATGTGACTTCAATGGAGTGGCTACAATCTCCTCCACAAATCCAAGTCATGGTTCCTGTCTATTTCCAGGAAGTCTTGGAAAGAATGGCACCTTGGCTAACATCACAGCACCATCAATGAATTCCACAAGTTCAGATTCTTCTGCCTGCAACCTCTACAGCTGTGAATTGAGAATAAGAAGCATTGTAATGGTGATAGGGTTTTTAATGTGGGGAGTGGTTTTGTAA 1521 0.4372 MAVFGRMKSMALNLILLLLAVLVVAGDEEPFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYNADQAMLIALAKTGIQVVVSVPNEELLGIGQSNSTAANWVSRNVVAHYPATNITAICVGSEVLPTLPNAAKVLVSALKYIHSALVASNLDRQIKVSTPLPSYIILDSFPPSQAFFNRSLNPVLVPMLDFLQSTNSYLMLNVYPYYDYMQSNGIIPLDYALSKPLPPNKEAVDSNTLLHYSNVFDAVVDAAYFAMAFLNYTNIPVVVTESGWPSKGASNEPDATVDNANTYNSNLIKHVLNKTGTPKHPGIAASTYIYELYNEDAKPGPLSEKNWGLFDADGSPIYILHLTGSGAVLANDTTNQTFCIAKDGADPKMVQAALDWACGPGKVDCSPLLQGQPCYEPDNVIAHANYAFDAYYLKMGRSPEACDFNGVATISSTNPSHGSCLFPGSLGKNGTLANITAPSMNSTSSDSSACNLYSCELRIRSIVMVIGFLMWGVVL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1729 506 SUPERFAMILY (Trans)glycosidases 32 351 IPR017853 -
Glsi10g1729 506 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Glsi10g1729 506 Gene3D Glycosidases 31 357 - -
Glsi10g1729 506 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 441 IPR044965 GO:0004553|GO:0005975
Glsi10g1729 506 Pfam X8 domain 369 440 IPR012946 -
Glsi10g1729 506 FunFam Glucan endo-1,3-beta-glucosidase 4 363 457 - -
Glsi10g1729 506 FunFam Glucan endo-1,3-beta-glucosidase 3 31 356 - -
Glsi10g1729 506 SMART X8_cls 368 453 IPR012946 -
Glsi10g1729 506 Pfam Glycosyl hydrolases family 17 32 351 IPR000490 GO:0004553|GO:0005975
Glsi10g1729 506 Gene3D - 362 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1729 Glsi-ChrGlsi10 11859807 11863034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1729 26 497 Glycoside Hydrolase AT1G66250 74.051 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1729 10 11859807 11863034 Glsi10g1729 10 11859807 11863034 CCT
Glsi10g1729 10 11859807 11863034 Glsi10g1729 10 11859807 11863034 ECH