Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1724 ATGGGGGAATCTGGGGTTTGCGAAGCCTCCCTTCCTGCAGCTTCAATGGCGACAGAAGAGGTCAATAAACCTCCGTCACTTCCTCCTTACCCTGAGATGATAATGAAAGCACTGGAGGCCCTGAACGAAGAGAACGGGTCCAACAAATCGGCTATAGCAAATTACATAGAGTCCACCTACGGCGAGCTTCCGGCGGGTCACTCGACCCTTCTCTCTCACCACCTCAACAAGATGAAAGACAGCGGAGAGCTAGTGTTCTTGAAAAACAACTACATGAAGCGCGACCCAAATGCCCCACCAAAGCGAGGCCGTGGAAGGCCACCCAAGCCTAAAGTTCCTCTGCCTCCAGGTACTGTCCTGTCCTCACCAAGGCCGAGAGGTCGCCCTCCGAAGGACCCAAATGCTCCACCAAAGCCTAAAGTTTCAACCGGCACCGGCAGACCCAGAGGCAGGCCCAAGAAGATTGCTCGGTCGATGACGAAGGAGAATGCATCCGGCGGCGGAAGGCCAAGAGGTAGGCCCCCAAAGGAGAAGCCTGCATTGACGGAAGGTAGGTTATCCATTCGCTATTTCCCTTCCCATGCACTTGAGCACTTTACTGCAACTGCTGCTTTTGCCGCTCCTGAGATGCACCGAGCTTTAATGGAACTTTTTTGTACCAACGGTTCATGGGCCGACTCTCATTGCTCCCCCCTCCATCATCGCACGGTTCTGTTGGAATCTCCAGTTCTACATTAG 738 0.5379 MGESGVCEASLPAASMATEEVNKPPSLPPYPEMIMKALEALNEENGSNKSAIANYIESTYGELPAGHSTLLSHHLNKMKDSGELVFLKNNYMKRDPNAPPKRGRGRPPKPKVPLPPGTVLSSPRPRGRPPKDPNAPPKPKVSTGTGRPRGRPKKIARSMTKENASGGGRPRGRPPKEKPALTEGRLSIRYFPSHALEHFTATAAFAAPEMHRALMELFCTNGSWADSHCSPLHHRTVLLESPVLH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1724 245 FunFam HMG-Y-related protein A 23 105 - -
Glsi10g1724 245 Pfam AT hook motif 168 179 IPR017956 GO:0003677
Glsi10g1724 245 Pfam AT hook motif 101 109 IPR017956 GO:0003677
Glsi10g1724 245 Pfam AT hook motif 146 156 IPR017956 GO:0003677
Glsi10g1724 245 Pfam AT hook motif 123 134 IPR017956 GO:0003677
Glsi10g1724 245 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 26 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi10g1724 245 MobiDBLite consensus disorder prediction 91 180 - -
Glsi10g1724 245 Pfam linker histone H1 and H5 family 28 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi10g1724 245 Gene3D - 22 104 IPR036388 -
Glsi10g1724 245 PRINTS AT-hook-like domain signature 101 111 IPR017956 GO:0003677
Glsi10g1724 245 PRINTS AT-hook-like domain signature 144 154 IPR017956 GO:0003677
Glsi10g1724 245 PRINTS AT-hook-like domain signature 121 132 IPR017956 GO:0003677
Glsi10g1724 245 MobiDBLite consensus disorder prediction 109 137 - -
Glsi10g1724 245 SMART h15plus2 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi10g1724 245 PANTHER HISTONE H1 17 179 - -
Glsi10g1724 245 SUPERFAMILY "Winged helix" DNA-binding domain 23 102 IPR036390 -
Glsi10g1724 245 PRINTS High mobility group protein (HMGY) signature 121 133 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Glsi10g1724 245 PRINTS High mobility group protein (HMGY) signature 144 155 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Glsi10g1724 245 PRINTS High mobility group protein (HMGY) signature 157 176 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Glsi10g1724 245 SMART AT_hook_2 101 113 IPR017956 GO:0003677
Glsi10g1724 245 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Glsi10g1724 245 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Glsi10g1724 245 SMART AT_hook_2 168 180 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1724 Glsi-ChrGlsi10 11833718 11843823 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1724 10 11833718 11843823 Glsi10g1724 10 11833718 11843823 CCT
Glsi10g1724 10 11833718 11843823 Glsi10g1724 10 11833718 11843823 ECH