Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1701 ATGTGGGCTCTGCCCGCGCAGTGGGCAAACAACTCAATGATGAGTAGCAAATTATCTGAGTCTGGTTCATTTGAAGTGGTGGTATCACAACCTAAACTTATGATCACAAAGGTCATTCTAATCTCGACTCTTGAGAGCCACTTCACATGGGGATTTGATATGGATCACACACGTGCAGAGAGTATTTGGCCAAAAAAGACAAAAAGGCCAGAAATTCGCTATGTCAGTGAACTTTGTTTCTTCTTTGCAGAAGAGGAGCAAATTGCAACCCTAGTCTCCCTCTCTCTGGTTTCGAGTCTCACTCACTCGTTCATGGCTGCACCCGAGCGCCCGAAAATGGACTGTTCGAACCTTGCCTTCCCAACACCCTCTCTAGCTTCACCTTCTGCCGCAATTTCTCCGGCCCCACCTTCTGCCGCAATTTCTCCGGCCCAATCTTCTGATGCTATTCCTCCGGCTCAACCTTCTGCTGCTATTTATCGGGCTCAACCTTCTTCTGCAATGTCTCCGGCTCAACCTTCTGCTGCAATGTCTCCGTCTCAACCTCCTGCTGCAATTTCTCCGGCCCAACCTTCTGCTCCAATTTCTCTGGCCCAACCTTCTGATGCTATTTCTCCGGCTCGACCTTCTGATGCTATTTATCGGGCTCAACCTTCTACTGCAATTTCTCCGGCTCAACCGTCTGCTGCTATTTCTCCGGCTCAACCTTCTGATGCTATTTCTCCGGCTCAACCTTCTGCTGCAAGTTCTCCGGCTCAACTTTCTGCTGCAAGTTCTCCGGCTCAACCTTCTTCTGCAAGTTCTCCGCTCCAACCTTCTGCTGCAAGTTCTCCGGCCCAACCTTCTGCTGCAATTTCTCCAGCAGTTGCAGCAGTTTCTTCAGCTCAAGCTGCACTTCCCATTAAATCTCCAGTCTCAGCTGGACCCTCTGCGCCAGTTCAGTTGCGATCCTCGGCGCCTTCAAGTAGTCGTCTTCCAAAACACTTGCTGTACAAAAATCGTTTACAAGAGTATGCTCAAAGATCAAGTTCAGCACTTCCCATGTATCAGACCGTCAATGACGGACCCAATCATGCCCCAAGGTTTAGATCAACAGTGTGGGTAGATGGAATGAGTTATACTTCCCAAAACACATTCTCCCACAGAAAAGCTGCTGAACAAGATGTTGCCAAGCTTGCTTTGGAGTGCATATTAAAAAAGATTAGAGATGAAGGGCTTCGTTTTATTCTTGAGAATGTTATGTTTTGCAAGTGTATCTTGTACGAATATGCTGTCAAGTTGAATCAAGAAATACCTCCATACGACACTGTTAGGCGGGAAGCGTTGGTTCCTCTTTTTATATCGTCTTTGGTTTTCAATGGTAAACGTTACACTGGTCATCCAGGTAAAAACAAAAAGGAGGCTGAGCAATTAGCAGCACGTGATGCTATTCTTTCAATTCTAGGTAATCCTGAATCAGGATCACTTCTTCCTGAGATAATAAGGTCAAAAGCCAAACTCTCTGCTGCAATAAAAAATGCGAAGGGCTCACAAGATGTGGATACTAGTACTGTATCTCCTATAGCGAACAAAGAACATACCTCTGTTGGTGCAGCTCCTGTGGCTGCTAATAATATTGAAATGCAGGTTGCACTTCCTGAGTGTTCTTATGGTGTGCTTCCACCAGAGCAAGAATTTCAGCTGCCAAAACAAGTAATATCCCCTGAAGTCTCCAAACTTCCAAATGTGTCTCTGCAAGCAGGTTTAGAACAGCATGTTGATGATAGTTCAAGTTTGAAAAAGCGAAAAAAGAACAAGAAAAAAGCTAATAAGAAGTCCCGGCTTGATTCTCTGTCACCACTGGCGGAATTTGTAGACTGCGTAGCTGATAGTAGATACTGA 1881 0.4572 MWALPAQWANNSMMSSKLSESGSFEVVVSQPKLMITKVILISTLESHFTWGFDMDHTRAESIWPKKTKRPEIRYVSELCFFFAEEEQIATLVSLSLVSSLTHSFMAAPERPKMDCSNLAFPTPSLASPSAAISPAPPSAAISPAQSSDAIPPAQPSAAIYRAQPSSAMSPAQPSAAMSPSQPPAAISPAQPSAPISLAQPSDAISPARPSDAIYRAQPSTAISPAQPSAAISPAQPSDAISPAQPSAASSPAQLSAASSPAQPSSASSPLQPSAASSPAQPSAAISPAVAAVSSAQAALPIKSPVSAGPSAPVQLRSSAPSSSRLPKHLLYKNRLQEYAQRSSSALPMYQTVNDGPNHAPRFRSTVWVDGMSYTSQNTFSHRKAAEQDVAKLALECILKKIRDEGLRFILENVMFCKCILYEYAVKLNQEIPPYDTVRREALVPLFISSLVFNGKRYTGHPGKNKKEAEQLAARDAILSILGNPESGSLLPEIIRSKAKLSAAIKNAKGSQDVDTSTVSPIANKEHTSVGAAPVAANNIEMQVALPECSYGVLPPEQEFQLPKQVISPEVSKLPNVSLQAGLEQHVDDSSSLKKRKKNKKKANKKSRLDSLSPLAEFVDCVADSRY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1701 626 Gene3D - 315 403 - -
Glsi10g1701 626 Gene3D - 404 485 - -
Glsi10g1701 626 MobiDBLite consensus disorder prediction 582 608 - -
Glsi10g1701 626 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 330 399 IPR014720 -
Glsi10g1701 626 PANTHER RIBONUCLEASE III 246 578 IPR011907 GO:0003723|GO:0004525|GO:0006364
Glsi10g1701 626 MobiDBLite consensus disorder prediction 159 183 - -
Glsi10g1701 626 SMART DRBM_3 331 398 IPR014720 -
Glsi10g1701 626 SMART DRBM_3 416 481 IPR014720 -
Glsi10g1701 626 SUPERFAMILY dsRNA-binding domain-like 325 397 - -
Glsi10g1701 626 Pfam Double-stranded RNA binding motif 331 395 IPR014720 -
Glsi10g1701 626 Pfam Double-stranded RNA binding motif 417 477 IPR014720 -
Glsi10g1701 626 MobiDBLite consensus disorder prediction 129 208 - -
Glsi10g1701 626 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 420 482 IPR014720 -
Glsi10g1701 626 SUPERFAMILY dsRNA-binding domain-like 414 480 - -
Glsi10g1701 626 MobiDBLite consensus disorder prediction 220 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1701 Glsi-ChrGlsi10 11506334 11527852 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1701 10 11506334 11527852 Glsi10g1701 10 11506334 11527852 CCT
Glsi10g1701 10 11506334 11527852 Glsi10g1701 10 11506334 11527852 ECH