Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1572 ATGCCACTCGCTTCCAACCATTCTGCTTTGAAGTGGAAGGAACCCTTTGAGAAACAGAGTGAGTCTCAGGAAGAGATTGGCGATAACATGAAGAATTATAGTAAGTACAAGTGGTTGATGTTCTTCAACAAGAAGTACAGGATCAATGACCAGGTTCCACCTCCTGCCCTCGAGGAGGTCTTTTCCCAGTTCGCCAGAGGTGGGCCCCGCATGGCAGCCGGCCAGCTCCGTCGGTTCCTGGTGGAGCACCAAGGCCAAGTAGACTGCACCTTATCGGATTCGGAGCAAATCGTTGAGAAGGTTTTGAAGGAGCGAAGGGGGCATCACGAAACTACTGATGCTGATCAGCTTATGGAACATGGACTCACCCTCGAAGACATCTTCTATTTTCTTCGTTTTAATGATTTCAATAGTCCCTTGAAAGATGAGGTACATCATGATATGGACGCTCCGTTATCACACTACTTCATATATACAGGGCATAATTCCTATCTGACTGGGAATCAACTGATCAGTGATTGCAGTGATGAACCAATCATAAAGGCTTTGCAACGAGGCGTGAGAGCTATCGAACTAGATTTATGGCCAACTTCCAATAAAGATGATATTAAAGTAGTTCATGGATGGTACAAGCTGATCATCAAGACTCTTACCAATCCTGTCTCACCCATCAAATGTCTGGAGGCCATAAAGAAACATGCTTTTGTTGCATCTCAGTACCCAGTGATTATCACTATAGAAGACCACCTTACAAGAGATCTTCGGGCTAAATTTGCAGAGATGGCGACTCAAATATTTGGAGAATTGCTTTATTATCCTCATACAGAATGTTCGACAGAATTCCCTTCTCCAGAATCATTGAAAAATAAAATAATTATATCCACCAAACCTCCAAAAGAATATCTCCGAACCACAAGTGTTAAGGATAAACGCAACAATCCTGTGCTGGATGGAAGCGAATCGTCTGAAGAAGAATCATGGGGACAAGAGTCGCAAGACTGTATGACGGAAATGGAGACACAGGACGGGAATGGAATCGATATAGATGAAGGGGATATGGATGCATCTGAATCTGATCACAAGTCAGACCAGCAGGGTTCACCTGATTACAAACGGTTAATTACTATACATGCTAGGAAAATCAAGGGTAGCCTAAAGGATAAATTGAGAATTGATGAGCAAGTTAGACGCATGAGTTGGAGTGAGCAGACACTTGAAAGGGCTTCTGAATCCCATGGATCTGACATTGTTAGGTTCACACAGAAAAATATCCTCAGGGTATACCCAAGAGGAACTCGTGTCAAATCCTCAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAAATGATTGCATTCAATATGCAGGGCCATGATAAACAACTCTGGTTAATGCAGGGAATGTTCAGGGCAAATGGAGGGTGTGGTTATGTAAAGAAGCCTCAAATAGTAATGCAGAAACTTCCAAATGACGAAGATTTTGATCCTAAAATAACATTGCCAGTGAAGAAGACATTAAAGGTGACAGTATACATGGGACACGGCTGGAGCTCAGATTTCAGTCCAACACACTTTGATAAGTGCTCTCCACCAGACTTTTACACAAAGATCTGCATTGTTGGAGTACCAGCTGATAGTGCCAAGAAGAAAACAAAAGTAATCATGGACAACTGGTTCCCTGTTTGGGAAGAAGAATTTGAATTCCCTTTGACTGTTCCAGAGCTTGCATTGCTCCGGATAATAGTGAAGGAGAAAGATCAGGGAAAGGATGACTTTGGTGGGCAGATTTGTTTGCCAGTCTCAGAGCTGAGACTCGGATTCCGATCAGTCCCTCTGTACGACAAAAAGGGAGAGAAATATAAATCTGTAAAGCTTCTAATGCGGTTTCAGCTTGAATGA 1902 0.4295 MPLASNHSALKWKEPFEKQSESQEEIGDNMKNYSKYKWLMFFNKKYRINDQVPPPALEEVFSQFARGGPRMAAGQLRRFLVEHQGQVDCTLSDSEQIVEKVLKERRGHHETTDADQLMEHGLTLEDIFYFLRFNDFNSPLKDEVHHDMDAPLSHYFIYTGHNSYLTGNQLISDCSDEPIIKALQRGVRAIELDLWPTSNKDDIKVVHGWYKLIIKTLTNPVSPIKCLEAIKKHAFVASQYPVIITIEDHLTRDLRAKFAEMATQIFGELLYYPHTECSTEFPSPESLKNKIIISTKPPKEYLRTTSVKDKRNNPVLDGSESSEEESWGQESQDCMTEMETQDGNGIDIDEGDMDASESDHKSDQQGSPDYKRLITIHARKIKGSLKDKLRIDEQVRRMSWSEQTLERASESHGSDIVRFTQKNILRVYPRGTRVKSSNFKPHIGWMYGAQMIAFNMQGHDKQLWLMQGMFRANGGCGYVKKPQIVMQKLPNDEDFDPKITLPVKKTLKVTVYMGHGWSSDFSPTHFDKCSPPDFYTKICIVGVPADSAKKKTKVIMDNWFPVWEEEFEFPLTVPELALLRIIVKEKDQGKDDFGGQICLPVSELRLGFRSVPLYDKKGEKYKSVKLLMRFQLE 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1572 633 ProSiteProfiles C2 domain profile. 485 615 IPR000008 -
Glsi10g1572 633 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 146 296 - -
Glsi10g1572 633 MobiDBLite consensus disorder prediction 354 371 - -
Glsi10g1572 633 MobiDBLite consensus disorder prediction 11 25 - -
Glsi10g1572 633 SMART plcy_3 370 486 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1572 633 FunFam Phosphoinositide phospholipase C 501 633 - -
Glsi10g1572 633 Pfam Phosphatidylinositol-specific phospholipase C, X domain 148 296 IPR000909 -
Glsi10g1572 633 PRINTS Phospholipase C signature 177 197 IPR001192 GO:0035556
Glsi10g1572 633 PRINTS Phospholipase C signature 280 297 IPR001192 GO:0035556
Glsi10g1572 633 PRINTS Phospholipase C signature 151 169 IPR001192 GO:0035556
Glsi10g1572 633 PRINTS Phospholipase C signature 424 445 IPR001192 GO:0035556
Glsi10g1572 633 PRINTS Phospholipase C signature 445 463 IPR001192 GO:0035556
Glsi10g1572 633 PRINTS Phospholipase C signature 599 609 IPR001192 GO:0035556
Glsi10g1572 633 Gene3D - 52 141 - -
Glsi10g1572 633 Gene3D Phosphatidylinositol (PI) phosphodiesterase 143 498 IPR017946 GO:0006629|GO:0008081
Glsi10g1572 633 Gene3D C2 domain 499 633 IPR035892 -
Glsi10g1572 633 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 399 485 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1572 633 MobiDBLite consensus disorder prediction 303 371 - -
Glsi10g1572 633 SUPERFAMILY PLC-like phosphodiesterases 146 487 IPR017946 GO:0006629|GO:0008081
Glsi10g1572 633 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 506 631 IPR035892 -
Glsi10g1572 633 CDD C2_PLC_like 504 633 - -
Glsi10g1572 633 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 18 632 IPR001192 GO:0035556
Glsi10g1572 633 Pfam C2 domain 506 605 IPR000008 -
Glsi10g1572 633 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 392 483 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1572 633 SUPERFAMILY EF-hand 41 148 IPR011992 -
Glsi10g1572 633 SMART C2_3c 506 613 IPR000008 -
Glsi10g1572 633 SMART plcx_3 146 296 IPR000909 -
Glsi10g1572 633 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1572 Glsi-ChrGlsi10 10516952 10519926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1572 21 633 Acyl Lipid Metabolism Gene Families AT2G40116 56.625 0.0 680
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1572 10 10516952 10519926 Glsi10g1572 10 10516952 10519926 CCT
Glsi10g1572 10 10516952 10519926 Glsi10g1572 10 10516952 10519926 ECH