Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1571 ATGTCCGGCGATCAACTTCGACAGTTCCTGGTGGATCACCAAGGCGAATTGGACTCCACCTCTTCGGATTGCAACCGAATTGTTGAGAACATTTTGCAGTCGCGGAAACAAAACGAGGAGATTTACAATTCGAAGACGAAGAAGTCCAATGAGGAACAGGGTCTCAGCCTCGACGAATTCTTCCATTTTCTGTTACTCAATGACTTCAATGCCCCCCTGAAAGCCCAGGTGCATCATGATATGAATGCTCCACTGTCACATTATTTCATATATACAGGGCACAATTCTTATCTGACTGGGAATCAACTGAGCAGTGATTGTAGTGACGTGCCAATTATAAAGGCTTTGCAACAAGGTGTGCGAGTAATTGAACTAGATTTATGGCCGAATTCAACTAAAGATGATGTTATTGTAGTTCACGGAAGGACTCTTACCACTCCTGTTTCACTCATTCAATGTTTGAAGTCTATTAAAGAGTATGCTTTTGTTAGTTCTCATTATCCAGTCATTATAACTTTAGAAGACCACCTCACACCGGATCTTCAAGCTATAGTTGCGGAGATGACAACGCAAGTATTTGGAGAAATGCTTCATTATCCCCAGACAGATAGTATAGTAGAATTCCCTTCACCAGAATCATTGAAAGATCGAATTCTTATATCGACCAAACCTCCTAGAGAATATCTTGAATCCGAGGATAAGGACAGTGAAAGGGAAGGATCATTGTCGCCAGACCGAATGTTTGAACTGGAAGCTGATGACAAGAATGGAAGCGATCAAGATGCGGAAGATTTGAATGCAAATGATAAAAAATCAACCCAGCAGGGTGCGCCTGAATACAAACGTTTGATTACGATACATGCTGGGAAAGCAAAGGGTCATGTAAAGGATTATTTAAAAGTTGGGGGTGGAGTTAAACGTCTAAGCATGAGCGAACAGACACTTGAAAAGACTTCTGCATCTCATGGAACCGATGTTTACACAGAAGAATATTCTCAGGGTGTATCCAAAAGGAACACGCCTCACCTCTTCCAATTACAGGCCTCATATTGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAACATGCAGTTACATCAAATTCATCTCCATATCACCCAATCTTCACCAGGAATGCAAACCTCCGAGCTTGTGTTTTCCTTTGGCAGGGGATTGGCAAATCTCTATGGTTCATGCAAGGGATGTTTAGAGCAAATGGAGAGTGTGGTTATGTGAAAAAGCCCGAATTCCTATTGCAGAAAGGTCCACACGGTGAGCTCTTTGATCCTATTAGAGCGTTGCCAGTAAAGAAGACGTTAAAGGTAAAAGTATATTTGGGGACCGGATGGAGTTCAGATTTCAGCCAAACACACTTTGATTCATTCTCCCCACCTGACTTTTACACAAAGGTTTGTATTGTTGGAGTACCAAATGATAAAGCCAAGAAGAAAACGAGGGTAATTCAAGATAATTGGTTTCCCATTTGGGACGAAGAGTTTGAATTCCCTCTGTCTGTTCCGGAGTTGGCTTTGCTGTGGGTAGAAGTTCGAGAGTACGACAGGCATGAAAAGGACGACTTTGGTGGGCAGACATGTTTGCCAATATCAGAGCTGAGATCTGGCTTCCGTGTTATAGGCTCTAGAATACAAACTGTTGTTGCAAGAACTCCAAACATTGTATCTGATAGCATGCAAGTTTTAGGGCTATTCTGTATAAAGCTGCCATACCTGAAACCAAAAATCCATGTAGATATGAATTGGATGGGCCATACCCTTTCAATGAAAACATTGATAATTGAATTGATTGATGGTTATCTGTCAAGTGTAAACACAGTCACGCAAGGTGGGAACGGGCACTTGATTGCAAAACTCCATAAACGACTTCCGTTTCCTCCTTCACTGCCCAACGCAAAGAAGCATCTTCAATTATTCCGATCAAAGTGCCGTCTTTCCTTTATATTGTCATAG 1968 0.4202 MSGDQLRQFLVDHQGELDSTSSDCNRIVENILQSRKQNEEIYNSKTKKSNEEQGLSLDEFFHFLLLNDFNAPLKAQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQQGVRVIELDLWPNSTKDDVIVVHGRTLTTPVSLIQCLKSIKEYAFVSSHYPVIITLEDHLTPDLQAIVAEMTTQVFGEMLHYPQTDSIVEFPSPESLKDRILISTKPPREYLESEDKDSEREGSLSPDRMFELEADDKNGSDQDAEDLNANDKKSTQQGAPEYKRLITIHAGKAKGHVKDYLKVGGGVKRLSMSEQTLEKTSASHGTDVYTEEYSQGVSKRNTPHLFQLQASYWVDVWSSDGCIQHAVTSNSSPYHPIFTRNANLRACVFLWQGIGKSLWFMQGMFRANGECGYVKKPEFLLQKGPHGELFDPIRALPVKKTLKVKVYLGTGWSSDFSQTHFDSFSPPDFYTKVCIVGVPNDKAKKKTRVIQDNWFPIWDEEFEFPLSVPELALLWVEVREYDRHEKDDFGGQTCLPISELRSGFRVIGSRIQTVVARTPNIVSDSMQVLGLFCIKLPYLKPKIHVDMNWMGHTLSMKTLIIELIDGYLSSVNTVTQGGNGHLIAKLHKRLPFPPSLPNAKKHLQLFRSKCRLSFILS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1571 655 SMART plcx_3 79 223 IPR000909 -
Glsi10g1571 655 SUPERFAMILY PLC-like phosphodiesterases 79 420 IPR017946 GO:0006629|GO:0008081
Glsi10g1571 655 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 545 IPR001192 GO:0035556
Glsi10g1571 655 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 406 544 IPR035892 -
Glsi10g1571 655 Gene3D Phosphatidylinositol (PI) phosphodiesterase 76 431 IPR017946 GO:0006629|GO:0008081
Glsi10g1571 655 Gene3D C2 domain 434 548 IPR035892 -
Glsi10g1571 655 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 368 418 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1571 655 Gene3D - 1 74 - -
Glsi10g1571 655 SMART plcy_3 280 419 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1571 655 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 366 417 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1571 655 FunFam Phosphoinositide phospholipase C 434 551 - -
Glsi10g1571 655 Pfam C2 domain 440 541 IPR000008 -
Glsi10g1571 655 SMART C2_3c 439 547 IPR000008 -
Glsi10g1571 655 PRINTS Phospholipase C signature 84 102 IPR001192 GO:0035556
Glsi10g1571 655 PRINTS Phospholipase C signature 110 130 IPR001192 GO:0035556
Glsi10g1571 655 PRINTS Phospholipase C signature 207 224 IPR001192 GO:0035556
Glsi10g1571 655 PRINTS Phospholipase C signature 533 543 IPR001192 GO:0035556
Glsi10g1571 655 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 79 223 - -
Glsi10g1571 655 MobiDBLite consensus disorder prediction 220 268 - -
Glsi10g1571 655 CDD C2_PLC_like 437 545 - -
Glsi10g1571 655 ProSiteProfiles C2 domain profile. 423 549 IPR000008 -
Glsi10g1571 655 MobiDBLite consensus disorder prediction 220 279 - -
Glsi10g1571 655 Pfam Phosphatidylinositol-specific phospholipase C, X domain 81 223 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1571 Glsi-ChrGlsi10 10505706 10510396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1571 1 545 Acyl Lipid Metabolism Gene Families AT2G40116 55.755 0.0 607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1571 10 10505706 10510396 Glsi10g1571 10 10505706 10510396 CCT
Glsi10g1571 10 10505706 10510396 Glsi10g1571 10 10505706 10510396 ECH