Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1570 ATGTCGAAACAGACTTACAGTGTCTGCTTCTGCTACCGCCGGCGGTTCAAGCTGGCAGTGTCGGAAGCACCGCTGGAGATCAAGACCCTTTTTGACCAGTACTCTGAGAATGGCTTTATGACAGCAGCTCACCTTCAGAGGTTCTTGGTTGAGGTTCAGAAAGAAGAGAATGTTTCTGAAGAGGAAGCGCAGGCCATCATTGATGACCTCAAGCATTTGAATATCTTTAACCGGAAGGGTCTCAATCTTGAGAGTTTCTTCAAGTACCTCTTCAGTGACAAAAACCCACCTCTGTCACCTTCTCTTGGGGTTCACCATGACATGACTGCACCCTTGTCTCATTATTTCATATACACTGGTCATAATTCCTATCTGACTGGGAATCAGCTCAGTAGTGACTGCAGTGATGTACCCATTATACAGGCCTTGCAGAGAGGTGTGAGAGTGATAGAATTGGATATATGGCCTAATGCCTCGAAGAATAATGTGGATGTTCTTCATGGAAGAACACTGACTACTCCAGTGGAGCTCATCAAATGTTTGAGGTCCATCAAGGAGCATGCATTTGTTGCATCTGAATATCCTGTTGTAATAACTCTAGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCCGAGATGGTCACTCAAACATTTGGAGACACTCTATTTTCACCTGGCTCTGAAGATTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAAGAGGATTATTATATCAACCAAGCCTCCTAAGGAGTACCTTGAGGAAAAGGAAGTAAAAGAAAAGGTGGACGATTCACATAAGGCAAGTGATGAAGAAGCTTGGGGGAACGAAGTCCCAAGCCTGAAAGGTGGTACTATGGCTGATTACAAGAACAATGTGGATGAAGAAAATTTTTGTGATGAGGAAGATCCTGATGAAACAGATAAGACACGTCATAATGCAGCACCTGAATATAGACGTTTAATTGCCATTCATGCTGGGAAGCCGAAAGGTGGATTAGACGAATGTCTAAAAGTGGATCCTGATAAAGTGAGTCGTCTAAGCTTAAGCGAGCAACAACTTGAAAAGGCTGCGGAAACTCATGGGAAAGAAATTGTCAGGTTTACCCAGCGGAATTTGCTGAGGGTGTATCCGAAAGGTACTCGCATTGACTCATCAAATTATAACCCACTGATTGGATGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGGAGATCACTTTGGTTGATGCAAGGAATGTTCAAAGCCAATGGTGGATGTGGTTATGTTAAAAAACCAGATTTTTTAATGAAGACTTTTCTAAATAATAAGGTCTTCGATCCAAGAGTTAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCCGGCACACGCACTTTGATCAATACTCTCCTCCAGACTTCTACACAAGAGTGGGGATAGCTGGAGTACCTGCTGATACTGTAATGAAGAAAACAAGGGCAATAGAGGATAATTGGTTGCCTACTTGGAATGAGGTATTCGAGTTCCCACTTACTGTTCCAGAACTGGCTCTGCTGCGCATAGAAGTTCATGAGTATGACATGTCAGAGAAGGACGACTTTGGTGGCCAAACATGCCTACCTGTTTCAGAGCTAAGAAAAGGGATTCGAGCAGTTTCACTGTATAGCCGCAAGGGAAAGAAGTACAACTCAGTAAAGCTTCTCATGCGCTTTGAATTTCATTGA 1761 0.4304 MSKQTYSVCFCYRRRFKLAVSEAPLEIKTLFDQYSENGFMTAAHLQRFLVEVQKEENVSEEEAQAIIDDLKHLNIFNRKGLNLESFFKYLFSDKNPPLSPSLGVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIQALQRGVRVIELDIWPNASKNNVDVLHGRTLTTPVELIKCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVTQTFGDTLFSPGSEDLKEFPSPESLKKRIIISTKPPKEYLEEKEVKEKVDDSHKASDEEAWGNEVPSLKGGTMADYKNNVDEENFCDEEDPDETDKTRHNAAPEYRRLIAIHAGKPKGGLDECLKVDPDKVSRLSLSEQQLEKAAETHGKEIVRFTQRNLLRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLMKTFLNNKVFDPRVKLPVKTTLKVTVYMGEGWYYDFRHTHFDQYSPPDFYTRVGIAGVPADTVMKKTRAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRKGIRAVSLYSRKGKKYNSVKLLMRFEFH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1570 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 458 585 IPR035892 -
Glsi10g1570 586 Gene3D - 23 101 - -
Glsi10g1570 586 SUPERFAMILY EF-hand 17 107 IPR011992 -
Glsi10g1570 586 MobiDBLite consensus disorder prediction 257 290 - -
Glsi10g1570 586 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 93 IPR015359 -
Glsi10g1570 586 Pfam C2 domain 460 560 IPR000008 -
Glsi10g1570 586 Pfam Phosphatidylinositol-specific phospholipase C, X domain 108 250 IPR000909 -
Glsi10g1570 586 SMART plcx_3 106 250 IPR000909 -
Glsi10g1570 586 CDD C2_PLC_like 456 585 - -
Glsi10g1570 586 MobiDBLite consensus disorder prediction 257 276 - -
Glsi10g1570 586 SUPERFAMILY PLC-like phosphodiesterases 106 439 IPR017946 GO:0006629|GO:0008081
Glsi10g1570 586 PRINTS Phospholipase C signature 234 251 IPR001192 GO:0035556
Glsi10g1570 586 PRINTS Phospholipase C signature 137 157 IPR001192 GO:0035556
Glsi10g1570 586 PRINTS Phospholipase C signature 111 129 IPR001192 GO:0035556
Glsi10g1570 586 PRINTS Phospholipase C signature 552 562 IPR001192 GO:0035556
Glsi10g1570 586 PRINTS Phospholipase C signature 397 415 IPR001192 GO:0035556
Glsi10g1570 586 PRINTS Phospholipase C signature 376 397 IPR001192 GO:0035556
Glsi10g1570 586 ProSiteProfiles C2 domain profile. 433 568 IPR000008 -
Glsi10g1570 586 SMART C2_3c 458 566 IPR000008 -
Glsi10g1570 586 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 350 436 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1570 586 CDD PI-PLCc_plant 105 425 - -
Glsi10g1570 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 351 437 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1570 586 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 585 IPR001192 GO:0035556
Glsi10g1570 586 SMART plcy_3 321 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Glsi10g1570 586 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 451 IPR017946 GO:0006629|GO:0008081
Glsi10g1570 586 FunFam Phosphoinositide phospholipase C 453 586 - -
Glsi10g1570 586 Gene3D C2 domain 452 586 IPR035892 -
Glsi10g1570 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 106 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1570 Glsi-ChrGlsi10 10500792 10505657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1570 1 585 Acyl Lipid Metabolism Gene Families AT3G55940 69.661 0.0 830
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1570 10 10500792 10505657 Glsi10g1570 10 10500792 10505657 CCT
Glsi10g1570 10 10500792 10505657 Glsi10g1570 10 10500792 10505657 ECH