Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1547 ATGGCAAACTCAGAAGAAGAAAATCAAGTTCCATTCCTTCAAAACTCTAACAATGTCCAGGAGAGGGAGGAATCTTCTAATGGCGACGATGAAGAGGAAGACGACTACAACGAGGTCGAGGACGATGAAGACGACAACGAACAGGACCTTCCTGCCCGAGTCCATGATGTTCTAATAAAGGGGAATACGAAAACCAAGGATTGGGTGATTGAGGCCGAGGTGGAGGGGATCAAGAACGCCACGACTATTCAAGAACTGGTAGAAGCAGCGAAAATTGCCAATGCGAAGCTTCATAGCCTCCAGATTTTTGATTCTGTTAACATTAGACTCGAACCGGGGCCACCAGAATTGGCTGGTACTGCCAATGTCATCATTGAGGTCTCAGAGACTGATAGCAAACTTTCTGGTGAATTCGGCATTTATTCAAAACCCTCGGCTAGTTCTTGGACTCTTGAAGGTGCCCTAAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGGTTCTCTGGCATATGGTGCCAATCAAACATCAGAGGTGAGTGTTGGGGTGTTTGTGCCTCGATTCAAAGGATTACTAACCCCTGTTGTGGCACGAATATTCATGCATTCCCAAGATTGGCAAGAGTTTTCTTCCTACAAAGAGCGGTTGTCAGGCATGTCTCTTGGCTTATTCTCAACAAAGCACCATGACTTAGTATACAATTTTGGGTGGCGTACCATAACAGATCCATCACAAATGTCGTCTAGGTCTATAAGGAGGCAGCTTGGACATGGTTTATTGTCATCTTTAAAGTATACATTTAAGATTGACAGGAGGAATTCGCCAGTTAGGCCTACAAAAGGATTTGCTTTTCTTTCTACAACTCAATTAGGTGGCCTTGTACCAGATCATCGGAGCTTGCAGTTTCTGCGTCAGGAGTTTGATGTTCGTTATGCTGTCCCTTTTGGTTTTTATCATACTGCACTGAACCTTGGGATCTCTGCTGGTGTCGTTTATCCATGGGGCCATGGGTTCTTGAACAAGCCTTCTCCCCTGCCAGAAAAGTTTTTCTTGGGAGGAGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCAACAACATTATGGGGATTCAGGACAAGGGCATTAGGCCCTAGTGAACCACGAAGGCGAAGTAGAGTAGGAATTAATGATGACAATGCTGACTCCCCTAAAAGAGACTTCATTGGAGGAGATCTTGCTGTCACTGCTTTTGCAGATCTCTCTTTTGATCTTCCAATTAGGTTGTTAAGAGATCTTGGAATCCACGGACATGTTTTTGCTGGTGCTGGGAATATTGCTAAGTTAACTGAGAACGAGTACAGGCAGTTCTCTCCTCGAAAATTTTTGGAATCATTTCGAACATCTGTGGGATGTGGGATTGTTATTCCTACTAAAATTTTCCGTCTTGAGGGTAACTTCTACTACATAATCAGGCAGCATGAGCATGATCGTGGAAAGACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1518 0.4427 MANSEEENQVPFLQNSNNVQEREESSNGDDEEEDDYNEVEDDEDDNEQDLPARVHDVLIKGNTKTKDWVIEAEVEGIKNATTIQELVEAAKIANAKLHSLQIFDSVNIRLEPGPPELAGTANVIIEVSETDSKLSGEFGIYSKPSASSWTLEGALKYKNLLGYGDLWDGSLAYGANQTSEVSVGVFVPRFKGLLTPVVARIFMHSQDWQEFSSYKERLSGMSLGLFSTKHHDLVYNFGWRTITDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPVRPTKGFAFLSTTQLGGLVPDHRSLQFLRQEFDVRYAVPFGFYHTALNLGISAGVVYPWGHGFLNKPSPLPEKFFLGGDFSPVCTLGGPTTLWGFRTRALGPSEPRRRSRVGINDDNADSPKRDFIGGDLAVTAFADLSFDLPIRLLRDLGIHGHVFAGAGNIAKLTENEYRQFSPRKFLESFRTSVGCGIVIPTKIFRLEGNFYYIIRQHEHDRGKTGFRFSFSAPS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1547 505 MobiDBLite consensus disorder prediction 1 53 - -
Glsi10g1547 505 Gene3D membrane protein fhac 51 130 - -
Glsi10g1547 505 FunFam Outer membrane OMP85 family protein 141 503 - -
Glsi10g1547 505 MobiDBLite consensus disorder prediction 1 22 - -
Glsi10g1547 505 Pfam Omp85 superfamily domain 159 502 IPR000184 GO:0019867
Glsi10g1547 505 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 137 503 - -
Glsi10g1547 505 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 17 502 IPR039910 -
Glsi10g1547 505 MobiDBLite consensus disorder prediction 25 47 - -
Glsi10g1547 505 FunFam Outer membrane OMP85 family protein 51 130 - -
Glsi10g1547 505 Pfam Surface antigen variable number repeat 53 129 IPR010827 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1547 Glsi-ChrGlsi10 10343180 10347487 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1547 10 10343180 10347487 Glsi10g1547 10 10343180 10347487 CCT
Glsi10g1547 10 10343180 10347487 Glsi10g1547 10 10343180 10347487 ECH