Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1265 ATGCAGAGCTGCCGCTTCCTCAACTTCAGCACCCAAAAGCTTTCATGGACTCACCGCCCCCTCACACCACCGACCCAAATAGTCAGGTTTCGATCACCACCACCCATCTCCGCGGTGGCCCTCTCAATGCCGGCGGAGAAGATAGAAGTTTTCAAGTCACTGGAATGCTGGGCTTCGGAGCGGCTCCTGCCGTTTCTGAAGCCCGTTGAGCAAAGCTGGCAACCACAGAACTTGGTGCCTGACTCTTCATTGCCGTTCGATGAATTCATTGATCGAGTGAAGGACCTGCGCGATCGGACGGCTGAGCTGCCAGATGAGTACTTGGTGGTTTTGGTAGGTGATATGATCACCGAGGAAGCACTGCCTACGTATCAGACCTGGATAAACAGCCTCGATGGCGTGAGGGACGAGACTGGAGCAAGCCCAAGTCCATGGGCCGTGTGGACCCGCTCTTGGACTGCCGAGGAAAATAGGCATGGGGATTTGCTCAGAACCTATCTCTATCTATCGGGTCGGGTTGATATGCTGATGGTTGAGAAGACCATCCAGTATTTGATTGGAGCTGGCATGGATCTGAGAACAGAAAACAACCCATACATGGGATTCGTGTATACATCCTTTCAAGAGCGAGCCACTTTTGTATCGCACGGCAACACGGCTCGATTAGCCAAGGAAGGGGGGGACTCGGTGCTAGCGCGCATATGTGGCACTATTGCGGCGGATGAGAAACGCCACGAGAATGCCTACGTTGGGATTGTCGAGAAGCTTCTGGAAGTGGACCCCACCGGTGCAATGTTAGCAATAGCAAGTATGATGCGGAAGAACATAACAATGCCAGCCCACTCGATGTACGATGGGAAAGACCCCGGTCTATTCGAGCATTTCTCCAGTGTGGCGCAACGATTGGGAGTGTACACGGCCAACGACTACGCGGACATCTTGGAGTTCTTGATCGGACGGTGGAGATTGGAGAAGTTGGAGGGGCTGACAAGTGAGGGAAAGCGTGCACGGGATTTCGTGTGTGGACTAGCGCCGAGGATTAAGAGGCTGCAGGAGCGAGCGGATGAGCGGGCACGCAAGATGCAGCCTCATGATGTGAAGTTCAGCTGGATCTTCAACAAGGAGGTAGCATTGAGAAAATGA 1143 0.5354 MQSCRFLNFSTQKLSWTHRPLTPPTQIVRFRSPPPISAVALSMPAEKIEVFKSLECWASERLLPFLKPVEQSWQPQNLVPDSSLPFDEFIDRVKDLRDRTAELPDEYLVVLVGDMITEEALPTYQTWINSLDGVRDETGASPSPWAVWTRSWTAEENRHGDLLRTYLYLSGRVDMLMVEKTIQYLIGAGMDLRTENNPYMGFVYTSFQERATFVSHGNTARLAKEGGDSVLARICGTIAADEKRHENAYVGIVEKLLEVDPTGAMLAIASMMRKNITMPAHSMYDGKDPGLFEHFSSVAQRLGVYTANDYADILEFLIGRWRLEKLEGLTSEGKRARDFVCGLAPRIKRLQERADERARKMQPHDVKFSWIFNKEVALRK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1265 380 PIRSF Dlt9_acylACP_des 15 378 IPR005067 GO:0006631|GO:0045300
Glsi10g1265 380 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 35 378 - -
Glsi10g1265 380 Pfam Fatty acid desaturase 46 372 IPR005067 GO:0006631|GO:0045300
Glsi10g1265 380 SUPERFAMILY Ferritin-like 40 376 IPR009078 -
Glsi10g1265 380 ProSitePatterns Fatty acid desaturases family 2 signature. 296 315 IPR005803 GO:0006633|GO:0016491
Glsi10g1265 380 CDD Acyl_ACP_Desat 46 354 IPR005067 GO:0006631|GO:0045300
Glsi10g1265 380 Gene3D Ribonucleotide Reductase, subunit A 36 378 IPR012348 GO:0016491
Glsi10g1265 380 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 37 376 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1265 Glsi-ChrGlsi10 8530979 8534687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1265 6 378 Acyl Lipid Metabolism Gene Families AT1G43800 70.876 0.0 562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1265 10 8530979 8534687 Glsi10g1265 10 8530979 8534687 ECH