Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1206 ATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGAGGAAGCGCAAGAGAGAATCCCAAATCAGCAGGCGGCAACAGAAGCATGAAGACGAGGAGGATGACGAAGAAGAGCCGAATGCTGAGGACGACCACCTGGAACGCGAGGATGATTCCGAGGACCAAACCCACCACCCTAATCCCCAATCCGGTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTCTTGTCTGACGATGGAGTTCAAATTTCCCCGTTCCCTAGAGTGATCAAGCGCACTGTCAATCGCCCTCACGCATCCGTCATGGCAATTGTGGCTTTGGAGCGAGCCAACGAGTCTGGAGACAACAAGGGTCAGCTGCAGAATCCTCCATTTTTGGAGAATGTGTCGCATGGGCAGCTTCAGGCGCTGTCCTCCGTGCCCGCCGATAGTTCTGCTTTGGATCAGGACCGAAATGATGGCAGTAATTCGGCTTATGTGATCACTCCGCCCCCCCTATTGGAAGGCCGTGGCATTGTTAAGCGGTTTGGGAGTAGGGTTCTTGTAGTCCCAATGCATTCAGAATGGTTTTCACCAACCACAGTGCATCGGCTAGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCAGATCATACTCCAGAGAAGTACATGGAATGCAGAAATTATATTGTTGCACGATACATGGAGGACCCACGGAAGAGGATTACAGTTTCTGATTGCCATGGATTGTTAGTTGGGGTTGATAATGAAGATTTAACTCGAATTGTCCGGTTCCTTGATCACTGGGGGATCATCAATTACTGTGCTCAGGTGCCAAGTCACGAGGCTTGGAATGATGAATCCTACCTGAAGGATGAGACAAGTGGTGAGATTCGTGTGCCATCAGATGCCTTAAAATCCATAGATAGTTTGATCAAATTTGACAAGCCCAAGTGTAAGCATAAAGCAGATGAAATTTATTCATCATTGACAACTCACAATGCCGATATATCTGATTTGGAGGACAGAATAAGAGAGAATCTATCTGAAAATCATTGCAATTATTGTTCTCGTCCTCTTCCTGTTGTATACTATCAGTCACAAAAAGAGGCTGATATTCTACTCTGCACTGATTGCTTCCATGATGGGAGTTTTGTCATTGGTCATTCAAGTATAGATTTTATAAGGGTGGATTCGACAAGGGATTATGGTGATCTAGATGGGGATTGTTGGACTGATCAAGAAACGTTGCTGCTTCTTGAGGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGTATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGGAAACTGGAAAATATCAATGTTCCAAGAATGTCATTGTCATCCAATATGTCAAATAGAGATGATTGTGGAAGATTGTGTTCAAATTTTGTTGGAGGCTCTGCAGGACCTAACTATCAGAGCATTGATCCTAACTGCCGGCTTCCTTTTGCAAATTCTGAAAATCCTGTTATGGCACTGGTTGCCTTTTTGGCCTCTGCTGTTGGACCAAGAGTAGCTGCTGCTTGTGCTCATGCAGCATTAGCTGAATTGTCCGAGGATAATTCTGGTAGCACATCACAGATGGAAGCACCAGGACATGGTAACAGGATGAATTTGGAAAGCATACATAGTAGAGATGGTGGTCCTCTTGGAGAAATTGCAAACTCAAATCAGCAAAATGAGGATGAGGCAAAAGTATTTGGTTCATGGGGTCAAAATGAGGGTGAAGCCACCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAAGCAGGCTTGTCTGCTGCAGCAATGAAAGCCAAACTGTTTGCTGATCATGAAGAAAGAGAAATTCAAAGGCTATGTGCTAATATTATTAATCATCAGTTGAAAAGATTGGAGTTGAAGCTGAAGCAGTTTGCTGAAATTGAAACATTGTTGATGAAAGAATGTGAACAAGTGGAGAAGGCGAGGCAAAGGTTTGCTGCTGATCGTTCCCGCGTTATATCAGCATGGCTTGGATCTGGTGTAGCAACGAACGTATCGGGTGTTGGTCCTTCCACAGTTAACAACAATAATGGCAATAGTAGGCAACAAATGGCCTTTGCTTCTCCTTCGCAGCCTAGCATCTCAGGGTACAGTAGTAGCCAACCAGTTCATCCACATATGTCCTTTTCCTCCCGGCCTTCAATGTTTGGGTTAGGGCAAAGGTTACCGCTTTCTATGATACAACAATCACAATCAGCATCTTCAAATCCGATGTTCAAAGCCCCAGGTAATGTGCAGCCTAATACCAATCATTCATTGCTGAGACCTGTATCAGGAACTAACTCTGGTTTAGGTTAG 2379 0.4464 MPASPSENRTKWRKRKRESQISRRQQKHEDEEDDEEEPNAEDDHLEREDDSEDQTHHPNPQSGSNSQAQLEIEVLSDDGVQISPFPRVIKRTVNRPHASVMAIVALERANESGDNKGQLQNPPFLENVSHGQLQALSSVPADSSALDQDRNDGSNSAYVITPPPLLEGRGIVKRFGSRVLVVPMHSEWFSPTTVHRLERQVVPRFFSGKSPDHTPEKYMECRNYIVARYMEDPRKRITVSDCHGLLVGVDNEDLTRIVRFLDHWGIINYCAQVPSHEAWNDESYLKDETSGEIRVPSDALKSIDSLIKFDKPKCKHKADEIYSSLTTHNADISDLEDRIRENLSENHCNYCSRPLPVVYYQSQKEADILLCTDCFHDGSFVIGHSSIDFIRVDSTRDYGDLDGDCWTDQETLLLLEAMEIYNENWNEIAEYVGTKSKAQCILHFLRLPMEDGKLENINVPRMSLSSNMSNRDDCGRLCSNFVGGSAGPNYQSIDPNCRLPFANSENPVMALVAFLASAVGPRVAAACAHAALAELSEDNSGSTSQMEAPGHGNRMNLESIHSRDGGPLGEIANSNQQNEDEAKVFGSWGQNEGEATPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVEKARQRFAADRSRVISAWLGSGVATNVSGVGPSTVNNNNGNSRQQMAFASPSQPSISGYSSSQPVHPHMSFSSRPSMFGLGQRLPLSMIQQSQSASSNPMFKAPGNVQPNTNHSLLRPVSGTNSGLG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1206 792 ProSiteProfiles SANT domain profile. 401 452 IPR017884 -
Glsi10g1206 792 FunFam SWI/SNF complex subunit SMARCC2 isoform C 402 452 - -
Glsi10g1206 792 Pfam Myb-like DNA-binding domain 405 447 IPR001005 -
Glsi10g1206 792 Gene3D - 402 452 - -
Glsi10g1206 792 SUPERFAMILY Homeodomain-like 403 456 IPR009057 -
Glsi10g1206 792 Pfam SWIRM-associated region 1 609 680 IPR032451 -
Glsi10g1206 792 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Glsi10g1206 792 PANTHER SWI/SNF COMPLEX-RELATED 66 684 - -
Glsi10g1206 792 SMART sant 402 450 IPR001005 -
Glsi10g1206 792 FunFam SWI/SNF complex subunit SMARCC2 isoform c 186 274 - -
Glsi10g1206 792 ProSiteProfiles Myb-like domain profile. 406 448 IPR001005 -
Glsi10g1206 792 MobiDBLite consensus disorder prediction 31 48 - -
Glsi10g1206 792 CDD SANT 406 447 IPR001005 -
Glsi10g1206 792 MobiDBLite consensus disorder prediction 754 792 - -
Glsi10g1206 792 Gene3D - 186 273 IPR036388 -
Glsi10g1206 792 ProSiteProfiles Zinc finger ZZ-type profile. 343 397 IPR000433 GO:0008270
Glsi10g1206 792 MobiDBLite consensus disorder prediction 537 573 - -
Glsi10g1206 792 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Glsi10g1206 792 MobiDBLite consensus disorder prediction 1 67 - -
Glsi10g1206 792 MobiDBLite consensus disorder prediction 702 734 - -
Glsi10g1206 792 SUPERFAMILY Homeodomain-like 179 271 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1206 Glsi-ChrGlsi10 8119528 8126641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1206 348 444 EF-hand Containing Proteins AT3G07740 33.019 5.70e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1206 10 8119528 8126641 Glsi10g1206 10 8119528 8126641 ECH