Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1111 ATGCCTTATCAGGTGTCATCTTCTATTTGCATACCCCATGCAGTTTCGGCAGAATCTAGTACAACTTATACCAGTCGGAGGTCTCACAGAGAGAGGAAAGCTGGTGAGTCACTAGCGCCGCATTTCAGAGAACATCATCAGACGAGAATCACCCGCAGTTTCAATATGGAGAACCTGCAGAATGAATATTTGTTTCCCGAGATATCCATGCGAGAGTGCGAACACGCTGAGAAAAATCCACATGCAAGGGTAATCAGACTTGGTATTGGTGATACCACACAGCCAATACCAGACGTCATAACTTCTGCTATGGCTGAGCAAGCTCTTGCTCTATCAACAGGTCAGGGTTACAGGGGATATGGACCAGAGCAAGGAAACAGGGCTTTAAGGAAGGCTATAGCAGAAACATTATACCAAGATACACAAGTAAAAGAAAATGAGATATTTGTATCTGATGGTGCACAGTGTGACATTTCACGCATTCAGATGCTTCTAGACTCTAGTTTGTCAGTGGCTGTGCAGGACCCAACTTTTCCGGCGTATGTGGATTCCAGTGTCATTTTTGGTAGAGCTGGCAAGTTCCAAGCGGAAACTGAGAAGTACAGAAACATTGTGTACATGAAGTGTGGGCCTGAGAATAATTTTTTCCCCGACTTATCAGCTACTCCAAGGGCTGATGTCATTTTTTTTTGTTCTCCAAACAATCCCACTGGTAGTGCTGCATCTCGGCAGCAAATGAAGCAGCTTGTGGAATTTGCAAAAGCAAATGGATCAATAATCATTCATGACTCTGCTTATGCTGCCTACATATCAGACGGAAGCCCAAGATCAATATTTGAAATTCCTGGATCCAAAGAGGTAGCAATTGAAATTTCGTCATTCTCCAAATTTGCTGGTTTCACGGGTGTCCGCCTTGGCTGGACGGTTGTCCCTGAAGAACTGTTGTATTCTGATGGATATCCAGTCATAAAAGATTACAATCGCATCGTGTGCACCTGCTTCAATGGTGCATCAAATATTGTTCAAGCCGGTGGACTTGCTTGCCTTTCTGCACAAGGTTATCAGGCGCTGAGAACCACTGTGGATTACTACAAGGAGAATGCCAAAATTCTGGTTGACACGTTTGAATCACTTGGTCTGAGGGTGTACGGTGGCAAAAATGCCCCTTATGTATGGGTGCATTTTCCTGGGTTGAAATCATGGGACGTGTTCACCAAAATTCTTGAGAGAACAGACATAGTCACCATCCCAGGTATAGGATTTGGTCCCGGCGGCGAGGAGTTTATTAGAGTTAGTGCATTTGGTCAGAGAGAAAGTATATTGGAAGCTTCAAGGAGGCTAAGAAAATTTCTATAA 1356 0.441 MPYQVSSSICIPHAVSAESSTTYTSRRSHRERKAGESLAPHFREHHQTRITRSFNMENLQNEYLFPEISMRECEHAEKNPHARVIRLGIGDTTQPIPDVITSAMAEQALALSTGQGYRGYGPEQGNRALRKAIAETLYQDTQVKENEIFVSDGAQCDISRIQMLLDSSLSVAVQDPTFPAYVDSSVIFGRAGKFQAETEKYRNIVYMKCGPENNFFPDLSATPRADVIFFCSPNNPTGSAASRQQMKQLVEFAKANGSIIIHDSAYAAYISDGSPRSIFEIPGSKEVAIEISSFSKFAGFTGVRLGWTVVPEELLYSDGYPVIKDYNRIVCTCFNGASNIVQAGGLACLSAQGYQALRTTVDYYKENAKILVDTFESLGLRVYGGKNAPYVWVHFPGLKSWDVFTKILERTDIVTIPGIGFGPGGEEFIRVSAFGQRESILEASRRLRKFL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1111 451 MobiDBLite consensus disorder prediction 17 37 - -
Glsi10g1111 451 SUPERFAMILY PLP-dependent transferases 62 447 IPR015424 -
Glsi10g1111 451 NCBIfam LL-diaminopimelate aminotransferase 53 449 IPR019942 GO:0008483
Glsi10g1111 451 Gene3D Aspartate Aminotransferase, domain 1 64 447 IPR015422 GO:0003824
Glsi10g1111 451 PANTHER AMINOTRANSFERASE 28 450 IPR019942 GO:0008483
Glsi10g1111 451 Pfam Aminotransferase class I and II 83 443 IPR004839 GO:0009058|GO:0030170
Glsi10g1111 451 Hamap LL-diaminopimelate aminotransferase [dapL]. 51 450 IPR019942 GO:0008483
Glsi10g1111 451 CDD AAT_like 85 449 - -
Glsi10g1111 451 FunFam LL-diaminopimelate aminotransferase, chloroplastic 94 350 - -
Glsi10g1111 451 Gene3D - 94 351 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1111 Glsi-ChrGlsi10 7458966 7462345 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1111 10 7458966 7462345 Glsi10g1111 10 7458966 7462345 ECH