Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1107 ATGGCTAGTACCAAGTCTGATAAAAGTGAGGGAGATGAAGTCTTTCAGAATGAGATCTGCAAGAGGCGAAGAATGTCATCTACCTTTGATGAGGAGAGTCCAAGATTAATTCCAAATCTCCCTGATGAGTTATCCCTTCAGATAATTGCTAGACTACCTAGAATTTGCTACTTCAATATGAGGTTGGTGTCACGGAAGTGGAAGGCTATTATCATGGGTTCTGAACTATATAAACTAAGAAAAGAACTTGGAACAACTGAAGAGTGGCTATATCTGTTGATTAAGGTCGGAGAAAATAAGCTTTTGTGGCATGCTTTAGACCCTTGCTCTCGGAAGTGGCAGAGGCTGCCTGCTATGCCCAATGTGGTTAATGAAGAATCTAGAAAGGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTATTAGAATTGCTGAAGTTATTAGAGGTTTGCTTGGGCAGAAGGATGCTTTTGATGAAATGCCCTTTTGTGGTTGTGCCATTGGAGCTGTCGATGGATGTCTCTATGTTCTAGGTGGATTCTCTAGAGCTTCAACAATGAGATGTGTATGGCGATTTGATCCAATACAAAATACATGGAGCAAGGTGACTTCTATGTCTACAGGAAGGGCATATTGTAAGACAGGCATATTAAATAACAAGCTTTACGTTGTTGGAGGGGTTAGTCAGGGTCAAGCCGGATTAATTCCTCTTCAGTCTGCTGAAGTTTTTGACCCCTCCACAGATACATGGTCACATGTACCTAGTATGCCCTTCTCAAGAGCTCGAGTCCTGCCCACTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGATTGACCTCATACATGGGAAGGTTATGTGTTCCTCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGTGGGGAAATCTATGATCCTGAAATAAATTCATGGATAGAAATGCCAACTGGAATGGGTGAGGGTTGGCCTGCACGGCAGGCAGGTACTAAATTGAGTGTTGTGGTGGATGGTGAATTATATGCTTTTGATCCTTCTAATTCTCTGGATAGTGGAAAGATCAAGGTATATGATCAAGGAGAAGATGCATGGAAAGTGGTTATCGGAAAAGTCCCTATATATGATTCCGCAGATTCAGAGTCTCCGTATTTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATGATATTGCTGTTCTGCAGGCTGACCTGCACAATAATTTGGATTCTTCTGCTTCAACTTCAACTTCAACTGCTCTTTCACCCAGCTCTTTCCATGAATTTCCAGAACTAGTTGCAGAATCAGATGCAGTTGTTTGGAAGGTAGTTGCCAATAGGGATTTCGGGCCAGCTGAATTGGTCAGTTGCCAGGTGATTGATATTTAA 1416 0.4216 MASTKSDKSEGDEVFQNEICKRRRMSSTFDEESPRLIPNLPDELSLQIIARLPRICYFNMRLVSRKWKAIIMGSELYKLRKELGTTEEWLYLLIKVGENKLLWHALDPCSRKWQRLPAMPNVVNEESRKGSSRLWMWNMVEGIRIAEVIRGLLGQKDAFDEMPFCGCAIGAVDGCLYVLGGFSRASTMRCVWRFDPIQNTWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLIPLQSAEVFDPSTDTWSHVPSMPFSRARVLPTAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPEINSWIEMPTGMGEGWPARQAGTKLSVVVDGELYAFDPSNSLDSGKIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQADLHNNLDSSASTSTSTALSPSSFHEFPELVAESDAVVWKVVANRDFGPAELVSCQVIDI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1107 471 Pfam F-box domain 38 77 IPR001810 GO:0005515
Glsi10g1107 471 Gene3D - 102 378 IPR015915 GO:0005515
Glsi10g1107 471 Pfam Kelch motif 163 208 IPR006652 GO:0005515
Glsi10g1107 471 Pfam Kelch motif 211 259 IPR006652 GO:0005515
Glsi10g1107 471 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
Glsi10g1107 471 SUPERFAMILY F-box domain 33 103 IPR036047 GO:0005515
Glsi10g1107 471 SMART kelc_smart 222 272 IPR006652 GO:0005515
Glsi10g1107 471 SMART kelc_smart 175 221 IPR006652 GO:0005515
Glsi10g1107 471 Gene3D - 35 90 - -
Glsi10g1107 471 SUPERFAMILY Kelch motif 92 399 IPR015915 GO:0005515
Glsi10g1107 471 SMART fbox_2 40 80 IPR001810 GO:0005515
Glsi10g1107 471 PANTHER OS02G0202900 PROTEIN 22 469 IPR045887 -
Glsi10g1107 471 CDD F-box_AtAFR-like 36 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1107 Glsi-ChrGlsi10 7435452 7436867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1107 30 257 Miscellaneous Gene Families AT4G33900 26.496 4.50e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1107 10 7435452 7436867 Glsi10g1107 10 7435452 7436867 ECH