Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1076 ATGTCCATAAGCTTGTGCTCTCCTCAGTGTTTGCTTAATGAAGTGATTTGGGCTGTCTACCTGATTTACAACGCAGAGAACATGGAGAAGGATGAAGAGTTGAGAACGTGGCGGAATGGATTTCCAGACACACCATATCCCAATTTTCATCATCGTCATCGTGAGCATTTGGCCATTAGTTCTCCTGTTGTTTTCAGGGTCTCTCACACATCACATTCTTCTGCTTCAACTTCTCTCTCTAATGGGCTTCATGTTTCTCCCCATAGTTCCCCATATTCAGCTGCATTCCAGGACATCAAGCATCTAACACCCAACGATCATTACTCCACTAAATTGTTGTTGGACTCCGACTACTCGGATTTTCATATGGGGAAGAATATCAGTGATAAGCCGGTGGTTGATCTGGGACTGTCTAAGGATTTCTATAGAATGAATATTATAGATGGACAGGGAAACGGCACCAAAACCAAGGGACGTGAAATGGATTCCTACGGATTTGGATTTGGCACTCGTTCTTTTGATGCTAATATTCCAGGCTTTACTGAAACACGTAGCCCATTTGAAGATTTTTCTAATGAAGTTCCCAATCATGAGCGTATCCCATCTTCGACTTGGGGAGTTTCTCCAAGTTTAGTTTCTGATATGAAGTGGGCATTGCCTGCCTCAGGGAAAGTATACACTTCTCTCGCTCCTGAGCAGTCCAGCGCTTTGAACTTGGGCTCTTCTTGGAACATGAACCAAATATATCTTCAAATGGAGCACAGCGAGAAACAGGGGAGCAGTCACTGCGATGAAGAATTTCATTTCCAGAAGCCATCTGTTATTACACACTTCGTTTGCGATGGTTTAACTGGCTCACAACCTCGTGGAATGGATTGCGATGAAAGCTGGAATGTTAAAAATGCCTTAAGATTCTCTCAAATTATGCACCCGAAGCTTCTGGATAATCCATGGGATTACCGTCCGACAACAAAAGAAATAACGAGGGGAACTGGCAAATTTGAGCTGCCCGAATTTCTCTCGTCCAAAAAAGCTGGAGGCGACCCTCTGGCATTTAGATGTGATAATAGTTTTATCATACAAGGAAAAGATGTAAATTATTGCTTTGACAACGGATGCAATTCTTTGAGGGGTTGCAAAAAAAATTCCCACAATGAGATTGCAATTGAAACTGTCGGAGGGAGAGTTTCTAAATACCATTCTCATACTGCCGATAGTCAATTTTGTGAGAATAATGGAAGTCTTGTTGGTGATTTCCTATTTCCCTCGTTACTAACATTCTATTCTATCGCTGAGTACCAAGGTTACATTTACAATCTGGCAAAGGATCAGAATGGCTGTCGCTTCCTGCAAAGGATGGTTGATAAGGGAAACTTCGAAGATATGCAAATAGTCTTTGAGGGAATTATAGATAATGTTGTTGAACTTATGATGGACCCTTTTGGCAATTATCTTGTGCAGAAGCTGCTGGATGTATGCAGAGAAGAACAGAAATTGCAGATTGTCTGCATGGTGACTAAAGAACCAGGGCAGCTTGTCAGAATCTCTTTAAACACCCACGGCACACGCGTGGTACAGAAGTTGATTGAGACTCTGAATTCTAAGAAACAAATTTCATTAGTGAAATCAGCCCTTCAAGCAGGTTTTCTTGATCTTATTAAAGATCTGAATGGAAATCATGTCATACAAAGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTGTTTTTTATGCTGCTGTCAAGTTTTGTGCTGACATAGCTACTCATCGACATGGATGTTGTGTACTGCAAAGTTGCATTGATTTTTCAGTGGGCAAATATCGAGATAAACTGGTCACAGAAATATGTAGACACGGGCTTCTCCTTGCTCAAGATCCTTTTGGAAATTATGTTGTTCAGTATATAATGGAGAAGAAGATCCCAACTGCCTCAACCAAGATGATTTCTCAATTCAAAGGGAACTATGTGAACCTCTCAACGCAAAAGTTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGAATGTTGGAGAGAGCAGATCGAGGATCGTTCGAGAATTGCTGTCGGCACCTCACTTCGAGCAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCAGTCTGCTCTAGCAGTGACCAAGGGCTCTCTTCATGCATCGTTGGTTGAAGCAGTTCGTCCTCACAAAATCTTGCGCACCAGCCCATATTGCAAGAGGATTTTCTCGGGAATCCTTCTTAAGAAGTGA 2250 0.4187 MSISLCSPQCLLNEVIWAVYLIYNAENMEKDEELRTWRNGFPDTPYPNFHHRHREHLAISSPVVFRVSHTSHSSASTSLSNGLHVSPHSSPYSAAFQDIKHLTPNDHYSTKLLLDSDYSDFHMGKNISDKPVVDLGLSKDFYRMNIIDGQGNGTKTKGREMDSYGFGFGTRSFDANIPGFTETRSPFEDFSNEVPNHERIPSSTWGVSPSLVSDMKWALPASGKVYTSLAPEQSSALNLGSSWNMNQIYLQMEHSEKQGSSHCDEEFHFQKPSVITHFVCDGLTGSQPRGMDCDESWNVKNALRFSQIMHPKLLDNPWDYRPTTKEITRGTGKFELPEFLSSKKAGGDPLAFRCDNSFIIQGKDVNYCFDNGCNSLRGCKKNSHNEIAIETVGGRVSKYHSHTADSQFCENNGSLVGDFLFPSLLTFYSIAEYQGYIYNLAKDQNGCRFLQRMVDKGNFEDMQIVFEGIIDNVVELMMDPFGNYLVQKLLDVCREEQKLQIVCMVTKEPGQLVRISLNTHGTRVVQKLIETLNSKKQISLVKSALQAGFLDLIKDLNGNHVIQSCLQCLSCQDNEFVFYAAVKFCADIATHRHGCCVLQSCIDFSVGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIMEKKIPTASTKMISQFKGNYVNLSTQKFSSHVVEKCLKNVGESRSRIVRELLSAPHFEQLLQDPYANYVIQSALAVTKGSLHASLVEAVRPHKILRTSPYCKRIFSGILLKK 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1076 749 Gene3D - 425 747 IPR011989 -
Glsi10g1076 749 ProSiteProfiles Pumilio RNA-binding repeat profile. 687 724 IPR001313 GO:0003723
Glsi10g1076 749 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 411 749 IPR033133 GO:0003723
Glsi10g1076 749 SUPERFAMILY ARM repeat 431 743 IPR016024 -
Glsi10g1076 749 ProSiteProfiles Pumilio RNA-binding repeat profile. 432 467 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 623 639 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 437 470 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 656 689 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 472 504 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 549 575 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 585 618 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 693 711 IPR001313 GO:0003723
Glsi10g1076 749 Pfam Pumilio-family RNA binding repeat 511 538 IPR001313 GO:0003723
Glsi10g1076 749 FunFam Pumilio homolog 9 424 749 - -
Glsi10g1076 749 ProSiteProfiles Pumilio RNA-binding repeat profile. 504 542 IPR001313 GO:0003723
Glsi10g1076 749 CDD Pumilio 433 743 IPR033712 GO:0003723
Glsi10g1076 749 ProSiteProfiles Pumilio RNA-binding repeat profile. 616 651 IPR001313 GO:0003723
Glsi10g1076 749 ProSiteProfiles Pumilio RNA-binding repeat profile. 468 503 IPR001313 GO:0003723
Glsi10g1076 749 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 207 743 - -
Glsi10g1076 749 SMART pum_5 652 686 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 507 542 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 689 724 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 544 579 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 432 467 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 468 503 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 580 615 IPR001313 GO:0003723
Glsi10g1076 749 SMART pum_5 616 651 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1076 Glsi-ChrGlsi10 7205837 7213053 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1076 10 7205837 7213053 Glsi10g1076 10 7205837 7213053 ECH