Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1072 ATGGCCGTCGGGGGATTCGCCGTTGATGGACCTACCAATGCCTTCGACGGAAAGATAACACTCTCAGTTGTTATCACTTGCATAGTTGCTGCATCCAGTGGTCTCATTTTTGGATATGACGTCGGAATTTCAGGAGGTGTGACTACGATGACACCATTTCTTGAGAAATTCTTCCCAGCAATACTGAAAAAGGCTGCCAGCGCCGAAACTAACATCTACTGCGTGTATGACAGTCAGGTGTTGACGTTATTCACGTCCTCGCTCTACCTAGCAGGGTTGGTGTCATCTCTCGCAGCCAGCCGTGTTACCGCCTCGCTGGGACGGAGAAACACCATGATCTTAGGTGGTTGCGCCTTCCTTGCCGGTGGTGCCATTAATGGTGGCGCTGAAAACATTGCTATGCTCATCTTGGGCCGTATCTTGCTCGGCCTCGGGGTCGGATTTACCAATCAGGCAGCACCGGTGTACCTTTCGGAAATTGCTCCAGCCAAATGGAGAGGTGCGTTCAACGCAGGCTTCCAATTCTTCCTGAGTGTTGGGGTGGTTGCTGCCAACTGCATAAACTTTGGCACGGCCAAGCACCCTTGGGGGTGGCGACTCTCTCTTGGCCTTGCCGTGGCACCAGCCACCATCATGACCACTGGTGCTTTCCTAATTACTGACACGCCTAGCAGCTTAGTGCAACGTGGAAAGATAGATAAAGCCAGAAACGCCCTACGAAGAGTGAGAGGGTCCAGTATCGATGTAGAGCCTGAGTTGGATGACCTTATCAAACGGACCCAGCAATCAAAAACTCTCCAGCTGGAGCCCTTTAGCACCATATTTGAGAGACAATATCGACCTCATTTGGTGATGGCAATTGCTATCCCATTTTTCCAGCAGCTTACTGGCATTAATATCGTCGCATTTTATTCACCCAATCTCTTTCAATCTGTGGGTTTTGGAAACGACGCAGCTTTACTCTCAACCATTATTCTGGGAGTGGTTAACCTTGCGTCTATAATGGTGTCCAGTGCTGTTGTTGATCGATTTGGTCGAAGATTCTTGTTCGTAGTTGGTGGTATTCAGATGGTTGCCTGTCAGATTGCGTTGGCTGTTGTGCTAGCGCTTGCGAATAGTACAGAGCACCTTTCGAAGGGAAATGCCACATTAGTACTGGTGCTATTGTGCTTGTACGCTGCCGGTTTTGGGTGGTCATGGGGCCCTCTCAGCTGGCTCATTCCAAGTGAAATATTCCCCTTGAAAATCAGGACCACCGGACAGAGCATAAGCATTGCCGTGAACTTCTTGACCATATTTGTGTTATCCCAGACATTCTTGACGATGCTATGCCACTTTAAATACGCTGCATTCTTGTTCTATGCGGCTTGGATTGCTGTGATGACCATCTTTATAATACTCTTCTTGCCAGAGACCAAAGGAATTCCTCTGGAATCAATGCAGGCAATATGGGGAAAACACTGGTTCTGGCGCCGCGTTGTTGTTAATGAAGAAAACCAAAATAATCTACCGTGA 1515 0.4858 MAVGGFAVDGPTNAFDGKITLSVVITCIVAASSGLIFGYDVGISGGVTTMTPFLEKFFPAILKKAASAETNIYCVYDSQVLTLFTSSLYLAGLVSSLAASRVTASLGRRNTMILGGCAFLAGGAINGGAENIAMLILGRILLGLGVGFTNQAAPVYLSEIAPAKWRGAFNAGFQFFLSVGVVAANCINFGTAKHPWGWRLSLGLAVAPATIMTTGAFLITDTPSSLVQRGKIDKARNALRRVRGSSIDVEPELDDLIKRTQQSKTLQLEPFSTIFERQYRPHLVMAIAIPFFQQLTGINIVAFYSPNLFQSVGFGNDAALLSTIILGVVNLASIMVSSAVVDRFGRRFLFVVGGIQMVACQIALAVVLALANSTEHLSKGNATLVLVLLCLYAAGFGWSWGPLSWLIPSEIFPLKIRTTGQSISIAVNFLTIFVLSQTFLTMLCHFKYAAFLFYAAWIAVMTIFIILFLPETKGIPLESMQAIWGKHWFWRRVVVNEENQNNLP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1072 504 Gene3D MFS general substrate transporter like domains 16 487 IPR036259 -
Glsi10g1072 504 PRINTS Sugar transporter signature 386 407 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 PRINTS Sugar transporter signature 409 421 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 ProSitePatterns Sugar transport proteins signature 2. 141 166 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 473 IPR020846 GO:0022857
Glsi10g1072 504 ProSitePatterns Sugar transport proteins signature 1. 337 354 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 Pfam Sugar (and other) transporter 27 484 IPR005828 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 SUPERFAMILY MFS general substrate transporter 28 480 IPR036259 -
Glsi10g1072 504 NCBIfam sugar porter family MFS transporter 21 479 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi10g1072 504 CDD MFS_STP 29 471 IPR044778 GO:0015145|GO:0015749
Glsi10g1072 504 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 494 IPR045262 GO:0015144
Glsi10g1072 504 FunFam Sugar transport protein 13 16 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1072 Glsi-ChrGlsi10 7168875 7171398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1072 50 492 Organic Solute Cotransporters AT1G34580 65.033 0.0 596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1072 10 7168875 7171398 Glsi10g1072 10 7168875 7171398 ECH