Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1064 ATGTCGGGTGGTGGGTGTAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTAGAGGATAATCCAGCACTGACGGCGGGAATGAGAGCAGGATCCGTGGTCGCAGTTTTTATATGGGCACCCGAAGAAGAGGGTCAATATTACCCTGGTAGGGTCTCCAGGTGGTGGCTCAAACACAGTTTGGCTCACCTTGATTCTTCTTTGAGGAGTCTTGGCACTCCTCTTATCACCAAGCGATCCGGGGATAGTGTATCTTCTCTACTAGAGGTTTTCAAGTCCACCGGAGCCACTCAACTCTTCTTTAACCATTTATATGATCCCCTATCGCTTATTAGGGATCATAGGGTAAAGGAGATTCTGACTGCTCAAGGCATAGCCGTACGTTCCTTCAATGCGGATTTACTATATGAACCATGGGATGTCAATGACGCCCATGGCCATCCATTCACAACATTTGCTGCTTTTTGGGAAAAATGCCTGAGCATGCCTTATGACCCAGAGGCACCTCTTCTCCCACCTAAAAGGATTGTTGCAGGTGATGTATCAAAGTGCCCTTCTGATACGTTGGTGTTCGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCCCGAGCATGGTCACCTGGGTGGAGCAATGCTGACAAGGCTTTGACCACATTCATAAATGGTCCTCTAATTGAGTACTCAAAAAATCGCAGGAAAGCTGACAGTGCCACAACCTCATTTCTTTCCCCCCATTTGCATTTTGGCGAGGTGAGTGTCAAAAAAGTCTTCCACCTTGTCCGCATTAAGCAAGTTTTGTGGGCCAATGAAGGGAACAAGGCTGGTGAAGAAAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTCAGAGAGTATTCAAGGTACATTAGTTTCAACCATCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTAGTAAATGAAGGCTATTTTAAGGCATGGAGACAAGGAAGAACTGGGTACCCGTTGGTGGATGCTGGCATGAGAGAGTTGTGGGCTACTGGTTGGCTGCATGATCGGATACGGGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGATACCCTCTTGGATGCCGATCTCGAAAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCCGATGGACGGGAATTAGACCGAATAGATAACCCACAGTTTGAGGGATACAAATTTGACCCAAATGGAGAATATGTACGACGTTGGCTTCCTGAACTTGCCAGACTACCAACTGATTGGATACATCACCCGTGGAATGCTCCAGAACCTGTACTCCAAGCTGCTGGAATTGAGCTGGGGTCAAATTACCCTCTTCCTATTGTGGGAATAGATGCAGCAAAAGTCAGATTGCAAGAAGCACTATCAGAAATGTGGCAACAAGAAGCAGCTTCAAGAGCCGCCCTTGAAAATGGAACCGAGGAAGGACTTGGAGACTCCACTGAATCAACTCCTATTGCCTTTCCTCAAGACATTCAAATGGAGGAAAGTCATGAACCTGTTAGGGTCAACCTCCCTCCTGTTGCTCGGCCCTACGAGGATCAAATGGTCCCAAGCATCACTTCTTCCCTGGTGAGAGTGGAAGAGGAAGAAGCTTCTTCGGATCTTCGAAACTTAACTGAAGATAGCAGAGCTGAGGTGCCAATAAATGTAAATGTACAACAAAATGCTAGAGAGACATTGAACCAAGGGGCGTTGCAGACTGTTCACATGAATACTCGTTTACAGAATACCGCAGTGGGGCTGAGAAATGCACCTGAAGATTCCACAGCTGAATCTTCAATTAGTAGTAGGAGAGAAAGGGACGGAGGTGTAGTTCCAGTATGGTCTCCACCAGCTTCTAGTTACTCAGAGCAATTTGTTGGAGATGAAAGTGGTATCGGGTCTAGTTCATCTTACCTGCAAAGGCATCCTCAATCTCACCAATTGATGAATTGGAGGCGGCTACCTCAAACCGGGTAA 2040 0.4662 MSGGGCSIVWFRRDLRVEDNPALTAGMRAGSVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRSLGTPLITKRSGDSVSSLLEVFKSTGATQLFFNHLYDPLSLIRDHRVKEILTAQGIAVRSFNADLLYEPWDVNDAHGHPFTTFAAFWEKCLSMPYDPEAPLLPPKRIVAGDVSKCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKVRLQEALSEMWQQEAASRAALENGTEEGLGDSTESTPIAFPQDIQMEESHEPVRVNLPPVARPYEDQMVPSITSSLVRVEEEEASSDLRNLTEDSRAEVPINVNVQQNARETLNQGALQTVHMNTRLQNTAVGLRNAPEDSTAESSISSRRERDGGVVPVWSPPASSYSEQFVGDESGIGSSSSYLQRHPQSHQLMNWRRLPQTG 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1064 679 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Glsi10g1064 679 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Glsi10g1064 679 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Glsi10g1064 679 Pfam Blue/Ultraviolet sensing protein C terminal 511 623 IPR020978 -
Glsi10g1064 679 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Glsi10g1064 679 NCBIfam cryptochrome photoreceptor 6 482 IPR014134 GO:0009785|GO:0009882
Glsi10g1064 679 MobiDBLite consensus disorder prediction 605 667 - -
Glsi10g1064 679 Gene3D - 134 293 - -
Glsi10g1064 679 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Glsi10g1064 679 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Glsi10g1064 679 MobiDBLite consensus disorder prediction 638 667 - -
Glsi10g1064 679 Pfam DNA photolyase 7 163 IPR006050 -
Glsi10g1064 679 Gene3D HUPs 8 206 IPR014729 -
Glsi10g1064 679 PRINTS DNA photolyase signature 352 370 IPR002081 -
Glsi10g1064 679 PRINTS DNA photolyase signature 143 159 IPR002081 -
Glsi10g1064 679 PRINTS DNA photolyase signature 332 348 IPR002081 -
Glsi10g1064 679 PRINTS DNA photolyase signature 391 405 IPR002081 -
Glsi10g1064 679 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Glsi10g1064 679 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Glsi10g1064 679 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1064 Glsi-ChrGlsi10 7090424 7094099 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1064 10 7090424 7094099 Glsi10g1064 10 7090424 7094099 ECH