Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0956 ATGTCATCAGTAGCCCAACCCACGAAGAACACCCCAATTCAAGGCCCAGTAGTAGCCAAGAAATTTGGGCCAACGGCCTTAAGGGTAGCCTTGGCAGATATTAGCAAAAAAGAGCTTGCAAAAACAGAGGAAGCCCCAATGCAGCAGGTTGGAGAGGCTCCTAATACACTCAAAAAACCACCGGATTCGATTCAGGAGTCGTCAAAAGTAGAGCAAAGGAAAAGTGCATCGAAGAATGGTGAATGGGCAATGCTCGAGGGGTGTGGAGCAACTAGGACTTTTAGTAATATGCTGGGTAAGATAAACGAGATAACCCCGCCAGTAAAAGCATTGGCTATTGATGCAGATCGTGTTCAGCCAGCGAGAATGGCGACGTTCGAACTTTACCGGAGGTCGACGATCGGAATGTGCCTCACGGAGACTTTGGATGAGATGGTTCAGAATGGTACCCTCAGCCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCTATGACTGAAGCTCTGGAAGCGCAAGTCAAGAGTAAGGTCTCCATTAAGGGACATCTACATACGTACAGATTCTGCGACAATGTTTGGACCTTCATCTTACATAATGCTCTTTTTAAGAGTGAAGAATGCCAAGAGGAGGTTGGACGGGTTAAAATAGTGGCATGTGACTCAAAGTTGCTTACACAATAA 687 0.4629 MSSVAQPTKNTPIQGPVVAKKFGPTALRVALADISKKELAKTEEAPMQQVGEAPNTLKKPPDSIQESSKVEQRKSASKNGEWAMLEGCGATRTFSNMLGKINEITPPVKALAIDADRVQPARMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALEAQVKSKVSIKGHLHTYRFCDNVWTFILHNALFKSEECQEEVGRVKIVACDSKLLTQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0956 228 MobiDBLite consensus disorder prediction 40 79 - -
Glsi10g0956 228 CDD TFIIA_gamma_N 126 171 IPR015872 GO:0005672|GO:0006367
Glsi10g0956 228 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 126 176 - -
Glsi10g0956 228 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 174 224 IPR009088 GO:0005672|GO:0006367
Glsi10g0956 228 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 123 228 IPR003194 GO:0005672|GO:0006367
Glsi10g0956 228 Gene3D - 125 176 IPR009083 GO:0005672|GO:0006367
Glsi10g0956 228 Gene3D - 177 227 IPR009088 GO:0005672|GO:0006367
Glsi10g0956 228 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 126 171 IPR015872 GO:0005672|GO:0006367
Glsi10g0956 228 FunFam Transcription initiation factor IIA subunit 2 124 176 - -
Glsi10g0956 228 Pfam Transcription initiation factor IIA, gamma subunit 182 223 IPR015871 GO:0005672|GO:0006367
Glsi10g0956 228 CDD TFIIA_gamma_C 179 224 IPR015871 GO:0005672|GO:0006367
Glsi10g0956 228 FunFam Transcription initiation factor IIA subunit 2 177 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0956 Glsi-ChrGlsi10 6257564 6268175 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0956 10 6257564 6268175 Glsi10g0956 10 6257564 6268175 ECH