Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0940 ATGGGTACTGGTTGGAGAAGAGCCTTTTGCACTCGCGACCCAGATTCCTCGATATCGGATAAAAAGCACAGAGGGGCAAGTCCTAGCCCTAGCCCCAGAAGCAGTGGTAGATTGGGTTTTCTCTCCGCAGGTAGCAACTCCTCCACTCCACGCTTGCAGCATCAACAGCAACAGCAATCCCAATCTGTGTCTAGTCCAAGCTTGCGTTGCCGAACAGTTGGGGAAGCAGCTCAAGCAGCAAACAAAAGTGACAGCCCCAGATTTCAAAGCAAAAGCACTCCCAAGCCAACTAAGTCCCCTAAAACGATAACAAGCTCAAATCCAACTTCTCCGCGCTCTCCTTTGAAGTTGTCTCTCTTCAAGAATAGCTTCAAATTCAGGAGTAGTTGTGGAATCTGTTTGAATAGCGTGAAAACAGGTCAAGGCACGGCCATTTACACTGCAGAATGTTCTCACGCCTTTCATTTTCCATGTATCGCTGCCCATGTTCGCAAGCATGGTAGCCTTGTCTGCCCCGTCTGCAGTGCCATCTGGAAAGACGTACCTCTTCTCGCCGCACACAAGAACCTCGTTTCAGAATCCGCGGAACTAAATAACGTCGCCGCAAAGAGAGTCGAAAAACCAAATGCCAGCGAGAAGAGAACAGAAAACTCGTCCCCAGTTTTCAGAACCAAGCCGGCTGAACCACCCCAACAATTACAACCGCCAAAGCAATCCGATTCGTACAGGTCCTACGATGATGATGAACCGCTTCTCTCTCCTACCTGCGGTGGCCGAATCATTCCAATACCTGAAGCTGACGAAAACGGCGAAGAAGACGAAGACGAAGTGGAGTTTCAGGGATTTTTCGCCAATCCAAAACCTTCATCCTCAGTCAGATCCTCCTCGGACGACCTGCAAATAAACGACCAAGATTCTAGGAATGTTCAGGTGAAGTTGATGCCCGAGTGTGCAGTAGTTTCAGTCTCTCGGAGCCAAAAGACTTATGCTTTGCTTTTAAGAGTGAAGGGTCCGCCGCCACTTCCGGCTCGGAGAAGCAATAACAGTGCCACGCCGCTTCTGGGCTCGTCGCGACGAGCGCCCATAGATCTTGTCACGGTTCTTGACGTAGGTGGCAGCATGAGTGGTGCAAAACTGCACATGCTTAAGCGGGCGATGCGTTTGGTTATTTCCTCCCTTGGCTCAGCTGACAGACTCTCCATAGTGGCTTTCTCGGCTACTCCCAAGAGACTTTTGCCCTTAAAAAGAATGACGGCTCAAGGCCAGCGCGTGGCTCGGCGTATCATTGACCGGCTTGTTTCTGGCCAAGGGACTTGCGTGGGTGATGCTTTGAGGAAAGCCACCAAAGTGCTCGAGGACCGGAGAGAGAGAAACCCAGTTGCCAGTGTCATGCTCTTATCGGACGGTCAAGATGAAAGGGTGCAAACAAGTGCCAATAAAAATCAGAGAAAATGCTCGAGCCACGTGTCATCGACTCGGTTCGCTCACATTGAGATTCCGGTTCATACATTTGGGTTTGGACAAAAGAGCGGCTACAGCCTTGAGCCGGCTGAAGATGCATTTGCCAAGTGCGTTGGCGGGTTATTGAGTGTGGTGGTGCAGGACTTGAGGATTCAGCTTGGCTTCCAGTCCGGCTCGTCGCTGGCGGAAATTAGCGGCGTCTACCTGTGCAGCGGGCGGCCCACAGTGCTGAGCTCAGGGTCCGTACGGCTCGGCGATTTGTACGCGGAGGAAGAGAGAGAGTTACTAGTGGAGCTGAGAGTTCCTATGTCGGCTTTGGGGACCCACCACGTGATGAGTGTACGGTGCCTTTATAAAGACCCTGCCACTCAAGAGGTCGTATCTGGTAGGGAACAGGCCCTACTGGTACCGCCGCCTCAGAGTTCCCCATCTTCCGGTACCCGTATCGAAAGGTTGAGGAATCTGTTCATAACAACGCGAGCCATAGCGGAATCTCGGAGACTGGTGGAGCACAATGACTTCACAAGCGCTCATCATTTGCTTGCTTCGGCTCGAGCTCTTTTAATGCAGTCTAACTCGATTTGGGCTGACCAGTATGTGCGTGGCTTGGAAGCTGAGCTGGCGGAGCTGCATTGGCGGAGACAGCACCCCACCGAACAGCTTCAGCAACAGCAAATGATGATGATGATGATGCAACGAAGGAGAGGGAACGAGAGGGAGACGGGCTTAGTGGATGAAAATGGAGAGCCGCTCACGCCAACGTCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGGTGGCCATGATGAAAAAGTCATTGAATAGAGTGAGCGACTTGCACGGCTTCGAAAACGCTAGTTGCCACCGCTTTGACAACAATTTCCAGCTAATCTTTTGTAAGGAATTGAGAGAACCAAGTGAGATAGGTGGCGCCGAAACAGCGAGACGGAAGCGTGCTTATATTGTCAATCAAGGTGCTACAAAAGGTAAATTACATTTAATATTACCGATACTGGTGACAAGTATTAGGCATAGATTATTCGTCATAAACACAAGCCTCACCAACACGATTCCTCTAATTGGTATAATACATTGCCAAAATAGCCACGGAATAACATGGTGTACATCTGTGAAGGACCCAAAAACCTAA 2610 0.5073 MGTGWRRAFCTRDPDSSISDKKHRGASPSPSPRSSGRLGFLSAGSNSSTPRLQHQQQQQSQSVSSPSLRCRTVGEAAQAANKSDSPRFQSKSTPKPTKSPKTITSSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECSHAFHFPCIAAHVRKHGSLVCPVCSAIWKDVPLLAAHKNLVSESAELNNVAAKRVEKPNASEKRTENSSPVFRTKPAEPPQQLQPPKQSDSYRSYDDDEPLLSPTCGGRIIPIPEADENGEEDEDEVEFQGFFANPKPSSSVRSSSDDLQINDQDSRNVQVKLMPECAVVSVSRSQKTYALLLRVKGPPPLPARRSNNSATPLLGSSRRAPIDLVTVLDVGGSMSGAKLHMLKRAMRLVISSLGSADRLSIVAFSATPKRLLPLKRMTAQGQRVARRIIDRLVSGQGTCVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQTSANKNQRKCSSHVSSTRFAHIEIPVHTFGFGQKSGYSLEPAEDAFAKCVGGLLSVVVQDLRIQLGFQSGSSLAEISGVYLCSGRPTVLSSGSVRLGDLYAEEERELLVELRVPMSALGTHHVMSVRCLYKDPATQEVVSGREQALLVPPPQSSPSSGTRIERLRNLFITTRAIAESRRLVEHNDFTSAHHLLASARALLMQSNSIWADQYVRGLEAELAELHWRRQHPTEQLQQQQMMMMMMQRRRGNERETGLVDENGEPLTPTSAWRAAEKLAKVAMMKKSLNRVSDLHGFENASCHRFDNNFQLIFCKELREPSEIGGAETARRKRAYIVNQGATKGKLHLILPILVTSIRHRLFVINTSLTNTIPLIGIIHCQNSHGITWCTSVKDPKT 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0940 869 ProSiteProfiles VWFA domain profile. 363 551 IPR002035 -
Glsi10g0940 869 SUPERFAMILY vWA-like 361 536 IPR036465 -
Glsi10g0940 869 MobiDBLite consensus disorder prediction 28 71 - -
Glsi10g0940 869 MobiDBLite consensus disorder prediction 78 114 - -
Glsi10g0940 869 Pfam von Willebrand factor type A domain 364 470 IPR002035 -
Glsi10g0940 869 FunFam Probable E3 ubiquitin-protein ligase EDA40 363 528 - -
Glsi10g0940 869 Gene3D von Willebrand factor, type A domain 363 528 IPR036465 -
Glsi10g0940 869 CDD RING-H2_WAVH2 127 180 - -
Glsi10g0940 869 SUPERFAMILY RING/U-box 123 180 - -
Glsi10g0940 869 MobiDBLite consensus disorder prediction 1 114 - -
Glsi10g0940 869 MobiDBLite consensus disorder prediction 202 277 - -
Glsi10g0940 869 Pfam RING-like zinc finger 130 159 IPR001841 -
Glsi10g0940 869 SMART ring_2 130 174 IPR001841 -
Glsi10g0940 869 SMART VWA_4 361 546 IPR002035 -
Glsi10g0940 869 ProSiteProfiles Zinc finger RING-type profile. 130 175 IPR001841 -
Glsi10g0940 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 226 IPR013083 -
Glsi10g0940 869 CDD vWA_C3HC4_type 362 533 - -
Glsi10g0940 869 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 128 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0940 Glsi-ChrGlsi10 6124258 6129476 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0940 10 6124258 6129476 Glsi10g0940 10 6124258 6129476 ECH