Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0939 ATGGCTGTTTCAACCAGCTTCTCCGGTGCCAAATTGGAGGCTTTATTGCTTAAATCTTCTTCCTCTTCGTCAAGGGCCCCCACTGCTACCCATATATCAGTTTTTGGCAAACCCGGTCAAATTAAAAGGACCCTGATTCAGAGAGGATTAATCCGCTGCGAGGCTGCTCTTCCTGATATATTGGTAAAGACCGATGATCCAAGTAATGCTAACAGCGTCTCTGCTCTTGAGCAACTTAAGACTTCTGCAGTTGACAGATATACAAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAGTGTGCATACTACACCTGTGGAAATGCGTGAAAAGCTTGCCATTCCAGAAGCAGAATGGGCCCGAGCCATTGGAGAGCTGTGTGGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACAGAATGGAGATATATGTTGTTGCTCTGTCCCAGCATCGTGGTGTCAAAGAGGTCACTGAATGGATGTCAAAGAAAAGTGGGATCCCCGTTTCCGAGCTTTGCCAGCACCGATTCTTGCTTTACAACAAAGATGCGACACAGCATCTTTTTGAAGTATCCGCAGGTCTTGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTCGGACAAGGAGTTAATGGCTTTGGGAGAAACATCAGTGGGCTTTTCAAGCATGCGATTACTGTGGGGAAGAGGGTTAGAACGGAAACTAATATTGCTGCTGGGGCAGTTTCTGTAAGCTCAGCTGCTGTTGAATTGGCCTTGATGAAGCTACCTGAAGCCTCGCATGATAATGCCAGGATGTTGGTTATTGGAGCGGGCAAGATGGGAAAGCTTGTAATCAAACATTTGGTGGCAAAAGGTTGTACAAAGATGGTAGTTGTTAATAGAACAGAGGAGAGAGTTGCAGCGATCCGTGATGAACTGAAGGATGTTGAAATTATATATAAACCCCTCTCAGAAATGCTCTCATGTGCTGGTGAAGCAGATGTAGTTTTCACAAGCACTGCATCAGAAAACCCTTTATTCTTGAAAGATCATGTTAAGGACCTTCCTTCTGCAAGGCAAGATGTTGGAGGCCTTCGTCTTTTTATTGATATCTCTGTTCCTCGGAATGTGGGTTCTTGTGTCTCAGATCTTGATTCTGTGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCTAATAAAGAGGATCGGCTTAGAAAAGCAATGGAAGCTCAGGAAATCATTGCTGAAGAATCAAAACAATTCGAAGCTTGGAGGGACTCACTGGAAACTGTTCCTACCATCAAGAAATTGAGGGCTTATGCTGAAAGAATTAGGGTTGCTGAGCTTGAGAAATGCTTAAGTAAGATGGGTGATGATATCTCAAAGAAGACAAGGAGAGCTGTGGATGACCTTAGCCGGGGTATAGTGAATAAGCTGCTTCATGGTCCAATGCAACACCTGAGGTGTGATGGAAGTGACAGCCGGACTCTAAGTGAGGCCCTTGAGAACATGTATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATTTCTGTTTTGGAGCAGAAGATTCGAGCCAAGGTGGAACAAAACCAGAAGACCTGA 1632 0.4467 MAVSTSFSGAKLEALLLKSSSSSSRAPTATHISVFGKPGQIKRTLIQRGLIRCEAALPDILVKTDDPSNANSVSALEQLKTSAVDRYTKERSSIVVIGLSVHTTPVEMREKLAIPEAEWARAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKKSGIPVSELCQHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHDNARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTEERVAAIRDELKDVEIIYKPLSEMLSCAGEADVVFTSTASENPLFLKDHVKDLPSARQDVGGLRLFIDISVPRNVGSCVSDLDSVRVYNVDDLKEVVAANKEDRLRKAMEAQEIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSEALENMYALNRMFSLETEISVLEQKIRAKVEQNQKT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0939 543 ProSitePatterns Glutamyl-tRNA reductase signature. 190 213 IPR018214 GO:0008883
Glsi10g0939 543 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 539 - -
Glsi10g0939 543 Pfam Shikimate / quinate 5-dehydrogenase 262 404 IPR006151 -
Glsi10g0939 543 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 418 516 IPR015896 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 97 247 IPR015895 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 Gene3D - 253 405 - -
Glsi10g0939 543 FunFam Glutamyl-tRNA reductase 93 252 - -
Glsi10g0939 543 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 416 516 IPR036453 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 FunFam Glutamyl-tRNA reductase 252 411 - -
Glsi10g0939 543 CDD NAD_bind_Glutamyl_tRNA_reduct 94 416 - -
Glsi10g0939 543 Coils Coil 305 325 - -
Glsi10g0939 543 Hamap Glutamyl-tRNA reductase [hemA]. 93 520 IPR000343 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 NCBIfam glutamyl-tRNA reductase 94 511 IPR000343 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 Gene3D - 92 252 IPR036343 GO:0008883|GO:0033014|GO:0050661
Glsi10g0939 543 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 252 412 IPR036291 -
Glsi10g0939 543 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 93 249 IPR036343 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0939 Glsi-ChrGlsi10 6121815 6124079 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0939 10 6121815 6124079 Glsi10g0939 10 6121815 6124079 ECH