Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0930 ATGTACAATCCCAAGCCGTCTTCACCATCCTCATTTTTGTGTCCAACAAAAACCCATCTCATAACTTCCCAAAAAGTCGTGGATTCCCCTGATGATCATCATGAAGATGAACTTCGCCGATGGCCAACTCTTAAAGAGGTGGTAGCAGAAATCAAAGCGATAGGAAATATATCAGGCCCAACAACCATAACCGGTTTGCTCTTATATTCAAGAGCTATGATCTCTATGCTTTTCCTTGGCTATCTTGGCGAAATGGAGCTTGCAGGAGGTTCTCTCTCTATCGGTTTCGCCAACATCACTGGCTACTCTGTGATCTCTGGATTAGCCATGGGAATGGAACCCATTTGTGGACAAGCTTACGGCGCAAAACAAGGGAAGCTACTTGGCCTGACACTGCAAAGAACTGTGCTTCTCCTTCTCTCCACTTCCATCCCCATCTCATTTATCTGGCTTAACATGAAGAGAATGCTCTTGTGGTGCGGTCAAGACGAAGAGATATCATCAATGGCTCAAACCTTCATTCTTTTCTCCATACCCGACCTTTTCTTCCTTTCCCTTCTCCACCCTCTGCGAGTCTACCTCAGAACTCAAAGCATCACATTGCCATTAACATACTGCTCTGCCATCTCGGTTCTCCTCCATGTCCCTCTAAATTTCCTTCTGGTAGTTCAATTCAAGATGGGTATTACAGGGGTAGCCATAGCAGCGGTTTGGACAAACCTCAATCTCTTTCTCTTGCTTTGTTCCTTTGTTTACTTCTCCGATGTATGTAAGGACTCATGGGTATCTCCAAGCATGGACTGCCTCAGGGGATGGTCTTCTCTGCTTGCACTTGCAGTTCCAACCTGCGTTTCGGTTTGCCTTGAGTGGTGGTGGTACGAGTTCATGATAATGCTTTGTGGACTTCTGGTCAATCCGAAAGCGACGATTGCATCAATGGGAATCCTTATCCAAACAACCTCTTTAGTCTATGTCTTCCCCTCATCTCTAAGCCTTGGTGTTTCCACAAGAGTTGGGAATGAGTTAGGCGCAAACCGCCCCGGAAAAGCCCGCATTTCCATGATTGTTTCCCTCTTCTGTGCTGTGGCTTTAGGCCTCGCAGCCATGCTCTTTACCACCTTAATGAGGCACCAATGGGGGCGGCTCTTCACCAGCGACGCTGAAATTCTCAAGCTCACAGCAGTTGCATTGCCTATTGCTGGGCTCTGTGAACTCGGAAACTGCCCGCAGACCACTGGTTGTGGAGTTCTAAGAGGCAGCGCAAGACCCACCATTGGAGCAAACATCAATTTGGGTTCATTTTACTTGGTGGGTATGCCAGTGGCTATCCTCATGGGGTTTATGGCCAAAATGGGATTTGCGGGGCTTTGGCTGGGGTTGCTTGCAGCCCAAGCCTCGTGTGCAGGTCTCATGCTATTTGTTCTCTGCAGAACAGATTGGAATGTGCTAGCAGAAAGAGCCAGAGAGCTAACCAAAACTTCAACTTCAGCTACTACTCCTGCTGCTAATTCTACCTTACCAACTTTCACAAAAACAGAGTCTAACAGAAATGCGTGTCTTAGAGACATAGTGGTCACTGATTCAGCCCCTGATGAAACAGACCCACTCATCATACCCACTGCCCAACACACTCTGAATTAA 1641 0.4729 MYNPKPSSPSSFLCPTKTHLITSQKVVDSPDDHHEDELRRWPTLKEVVAEIKAIGNISGPTTITGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQGKLLGLTLQRTVLLLLSTSIPISFIWLNMKRMLLWCGQDEEISSMAQTFILFSIPDLFFLSLLHPLRVYLRTQSITLPLTYCSAISVLLHVPLNFLLVVQFKMGITGVAIAAVWTNLNLFLLLCSFVYFSDVCKDSWVSPSMDCLRGWSSLLALAVPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPGKARISMIVSLFCAVALGLAAMLFTTLMRHQWGRLFTSDAEILKLTAVALPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILMGFMAKMGFAGLWLGLLAAQASCAGLMLFVLCRTDWNVLAERARELTKTSTSATTPAANSTLPTFTKTESNRNACLRDIVVTDSAPDETDPLIIPTAQHTLN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0930 546 CDD MATE_eukaryotic 50 486 IPR045069 GO:0042910|GO:1990961
Glsi10g0930 546 NCBIfam MATE family efflux transporter 72 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Glsi10g0930 546 PANTHER MULTIDRUG RESISTANCE PROTEIN 45 480 - -
Glsi10g0930 546 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Glsi10g0930 546 Pfam MatE 281 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0930 Glsi-ChrGlsi10 6039615 6041397 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0930 10 6039615 6041397 Glsi10g0930 10 6039615 6041397 ECH