LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0853	ATGACATCCGCATGGATCAGCGACTGTTTTGAGCTGTCCTCGTGTTTAAATGTGAAATTTCCTCACGGAAATGAAAATATGGCGATAGCTTGTAGGGTTTTATCATCAGTGAGAAAGAGTTGCAGTGAAAGGCTACACTTTCTAGCACTTCCTTCGAGCTCTCACCAGTTGAATTTCCACAAAGAATCAAATTCAAATCCCTTGCTCATCAAATTGCTTCGGGTACCCGATTCACGCATCAAGTCCACGCTAGATGAGGAATTGTGTTCCTTTAAAAGGCCAGAATTCTCTTGGGAATCTCTGGTTATCTCTCTCAAACCTTCTTCTTCTGAGAAAGCTCGATTGGTTTTGGAATGGATTTTGGAGAAAATGGTGAAAGATAATGAAACAGACCATGGTCTCATCTCTGAACTCATATCTCTATGTGGCAAGCTTCAGAATGTGCCACTAGCAATGCACGTGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACCTCCCTGGTTTTTAATTCCCTTATAAATGCTTGCTTGTGTTCACATAATATTATTACAGCATTTAGCTTATTTGAGATCATGGAGAATTCAGAGAGCTATAAACCTGATTTTCACACTTATAATATCTTTATCTCAGCATTTTCCAACTCAGGGAATGTTGATGCCATGTTAGCCTGGTACTCAGCTAAAAAGGCTGCTGGACTCGGTCCTGATCTTATAGCATTTGAATCCCTTATTTCAGGCTGTGTTAAATCAAGAAATTTTGAAATAGCTGATAGAATTTATGAAGAAATTCTGATCTCTGGAATTATACCTAGTATATCCATACTGGAAAATATGCTTGAAGGGCTTTGCAAGCAGAAAACTTTGGGTCGAGCTGAGGAGTTCTTTAAGTATGTAGTAGGTGTCAAATGGGAGATTAATGAAAACATGGCCGATAAATTAATGGCATTGTATCTTGAACAAGGGCAAGTGGAAAAGATGGAGGAGCTACTTGAAACTATGATGAAGTTCCGTCATATTGCTAATGGAGTTCTCTCACGAATCCACTGTGGGATTATACGGATGTATGCCATACTAGATAGATTGGATGATGTAGAGTTTGCTGTGGGAAGAATGTTGAAACAAGGGCTGTCCTTCGTAAATACAAATGATGTTGAAAAGGTTATCTGCTCATACTTTAGAAGAGAAGCTTATGATAGGCTACACGTATTCTTGGAATGTATAAAGAGCTGTTACACGCTTAGCAAATCCACTTACGATCTGTTAATAGCTGGCTATAGAAGAGCTGGATTACATGAAAAAGTGGATTTACTGATGGAAGACATGAAGTGA	1332	0.3904	MTSAWISDCFELSSCLNVKFPHGNENMAIACRVLSSVRKSCSERLHFLALPSSSHQLNFHKESNSNPLLIKLLRVPDSRIKSTLDEELCSFKRPEFSWESLVISLKPSSSEKARLVLEWILEKMVKDNETDHGLISELISLCGKLQNVPLAMHVFASMEANGVKPTSLVFNSLINACLCSHNIITAFSLFEIMENSESYKPDFHTYNIFISAFSNSGNVDAMLAWYSAKKAAGLGPDLIAFESLISGCVKSRNFEIADRIYEEILISGIIPSISILENMLEGLCKQKTLGRAEEFFKYVVGVKWEINENMADKLMALYLEQGQVEKMEELLETMMKFRHIANGVLSRIHCGIIRMYAILDRLDDVEFAVGRMLKQGLSFVNTNDVEKVICSYFRREAYDRLHVFLECIKSCYTLSKSTYDLLIAGYRRAGLHEKVDLLMEDMK	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0853	443	Pfam	PPR repeat	241	269	IPR002885	-
	Glsi10g0853	443	Pfam	PPR repeat	417	443	IPR002885	-
	Glsi10g0853	443	Pfam	PPR repeat	205	227	IPR002885	-
	Glsi10g0853	443	Pfam	Pentatricopeptide repeat domain	136	177	IPR002885	-
	Glsi10g0853	443	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	237	271	IPR002885	-
	Glsi10g0853	443	PANTHER	EXPRESSED PROTEIN	58	443	IPR044179	GO:0003729
	Glsi10g0853	443	Gene3D	Tetratricopeptide repeat domain	104	350	IPR011990	GO:0005515
	Glsi10g0853	443	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	202	236	IPR002885	-
	Glsi10g0853	443	NCBIfam	pentatricopeptide repeat	240	272	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0853	151	334	Miscellaneous Gene Families	AT4G11690	23.913	1.42e-12	67.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g0853	10	5475120	5477793	Glsi10g0853	10	5475120	5477793	ECH