Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0805 ATGCTTCAAATTCACATTCTCTCTTCCTTTCCTCCACTCCACTCAAAGTCACTTTCTTCCCTTTTTGTCCCTTCTTCTACTACTCCAACCCGGCGGCGTTTGACGAGCACCGCCACTCCTCATAAAAAGAATCTTAAGCGCCTCACTTCCCGCATCGTCCAACTCACTCGCCGTAGACAGCTTCGTCAGATTTTTGATGAGATTGAGATTGCCAAGAAACATTATGGGAAAATGAACACTATTGTCATGAACGCAGTCATGGAGGCCTGTATTCATTGCGGTGATATTGATTCAGCTCTTAGGATATTTAATGAGATGACAAAACCGCAGAGTTGCGGTGTGGATACTGTCACTTATGCCACGCTTCTGAAGGGATTAGGCAAGTTGCGGAAAGTTGATGAAGCCTTTCAATTGCTTGAATCTTTGGAAAAAGGTACTGCCCCTGGAAGACAAAAGTTGTCAGCATCACTGATCTATGGTCTGCTAAATGCCTTAATTGAATCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCTCGTTATGGTTATGTCCTTCGTGAAGGTGGCAAATTTTCAGTCTCAGTATACAACTTACTTATGAAGGGATACATAAACGCAGGTTTTCCTGAGGATGCAGTGAACTTGCACAATGAAATGTTACGTCAAGGAATGATGCCTGACAGGCTCACCTATAACACTCTTATGCTAGCATGTGTCAAGAGTCAAAAGATGGATGCTGCAATGCAATTTTTTGAAGACATGAAGGGCAAAGCACAGAAATTTACCTATGATAATCTGTCTCCAGATATTGTCACATATACAACATTGCTCAAGGGTTTTGGGCAGGCCAAGGATCTCTCTTCAGTTCTGAAAATAGTTCTGGAAATGAAGTTATGTCATGAGTTGTACATTGATCGAACAGCTTATACTGCAATAATTGATGCTTTACTAAACTGTGGTTCGGTTAAGGGTGCTCAATGCATTTTTGGAGAAATACTGAAGCAAGCTGGTTGGAATCCAGAGTTGAGGCCGAAGCCTCACCTCTATCTTTCCATGATGCGTGCTTTTGCTTTTCGAGGAGATTACAATGTAGTCAGAAATTTGCATGAGCGAATTTGGCCAGATTCTGCGGGAACTATCTTACCAGTTGCCCAAGAAGAAGCTGATCATCTTCTCATGGAGGCAGCGCTGAATGGCAGTCAGGTCCATGTTGCCATTGAAACTCTTATTAGTATTGCTTCAAAATGGAAGCGTATATCATGGACAAGTCGTGGAGGCATGGTTACTTTGCGCATAGAGGCCATATTGGGATTCACAAAGTCCATATTTAGTCCTTACCTACTTCCTCAGGTTTCACCTGCTGAACCAGTTGAGAGTTTTATGATGCCATTTGAAGCAACAGGACCACTACAAGGCTCTTTACAATTGAAGAAAGTGGTTATGCGTTTCTTTAATGATGCAGTTGTTCCTATCATTGATGATTGGGGCAGCTGTATAGGATTGTTGCACCGTGAAGACTGCACTCGGTTGAATGCTTTACTTTCAACGATGATGCGAAGTCCGCCTCCCACTGTTACAACCACAACATCTGTTGGTCACGTAGTTGATTTAATTTTGGAGAAGAGGTACCCAATGGTTATCATTGTGAAGTACACCAGCTCATATGGTAGTGCATACAGCTCAAGGGCAGTTGGAGTTTTTACAGCAGAACAATTGTATAGGCTTATCACTCCTGTATCTGAATTACGAGGACCAGAACTTTCAATCTATAGAAGATGA 1779 0.4266 MLQIHILSSFPPLHSKSLSSLFVPSSTTPTRRRLTSTATPHKKNLKRLTSRIVQLTRRRQLRQIFDEIEIAKKHYGKMNTIVMNAVMEACIHCGDIDSALRIFNEMTKPQSCGVDTVTYATLLKGLGKLRKVDEAFQLLESLEKGTAPGRQKLSASLIYGLLNALIESGDLRRANGLLARYGYVLREGGKFSVSVYNLLMKGYINAGFPEDAVNLHNEMLRQGMMPDRLTYNTLMLACVKSQKMDAAMQFFEDMKGKAQKFTYDNLSPDIVTYTTLLKGFGQAKDLSSVLKIVLEMKLCHELYIDRTAYTAIIDALLNCGSVKGAQCIFGEILKQAGWNPELRPKPHLYLSMMRAFAFRGDYNVVRNLHERIWPDSAGTILPVAQEEADHLLMEAALNGSQVHVAIETLISIASKWKRISWTSRGGMVTLRIEAILGFTKSIFSPYLLPQVSPAEPVESFMMPFEATGPLQGSLQLKKVVMRFFNDAVVPIIDDWGSCIGLLHREDCTRLNALLSTMMRSPPPTVTTTTSVGHVVDLILEKRYPMVIIVKYTSSYGSAYSSRAVGVFTAEQLYRLITPVSELRGPELSIYRR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0805 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Glsi10g0805 592 PANTHER OS09G0431600 PROTEIN 20 584 IPR044781 -
Glsi10g0805 592 Pfam Pentatricopeptide repeat domain 261 297 IPR002885 -
Glsi10g0805 592 Pfam PPR repeat family 79 127 IPR002885 -
Glsi10g0805 592 Pfam PPR repeat family 193 239 IPR002885 -
Glsi10g0805 592 Gene3D Tetratricopeptide repeat domain 33 146 IPR011990 GO:0005515
Glsi10g0805 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Glsi10g0805 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
Glsi10g0805 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Glsi10g0805 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Glsi10g0805 592 Pfam PPR repeat 308 334 IPR002885 -
Glsi10g0805 592 ProSiteProfiles CBS domain profile. 517 586 IPR000644 -
Glsi10g0805 592 NCBIfam pentatricopeptide repeat 195 227 IPR002885 -
Glsi10g0805 592 NCBIfam pentatricopeptide repeat 83 107 IPR002885 -
Glsi10g0805 592 NCBIfam pentatricopeptide repeat 230 255 IPR002885 -
Glsi10g0805 592 NCBIfam pentatricopeptide repeat 271 297 IPR002885 -
Glsi10g0805 592 NCBIfam pentatricopeptide repeat 117 143 IPR002885 -
Glsi10g0805 592 SUPERFAMILY CBS-domain pair 457 552 IPR046342 -
Glsi10g0805 592 Gene3D Tetratricopeptide repeat domain 262 427 IPR011990 GO:0005515
Glsi10g0805 592 Gene3D Tetratricopeptide repeat domain 160 261 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0805 Glsi-ChrGlsi10 5162360 5167769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0805 93 373 Glycosyltransferase AT1G05670 24.823 4.76e-17 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0805 10 5162360 5167769 Glsi10g0805 10 5162360 5167769 ECH